Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq8 129 4e-24 seq1 123 2e-22 seq3 100 2e-15 >seq8 Length=1298916 Score = 129 bits (142), Expect = 4e-24 Identities = 664/1043 (64%), Gaps = 17/1043 (2%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||||||||| || | ||| || |||||||| || ||||| || || | ||||||| Sbjct 234833 ATACCATTGGCGTCAACATCGAAAGTGACTTCGATCTGAGGAACACCACGGGGAGCAGGA 234774 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || || || | | ||| | || || || || || || ||| |||||| Sbjct 234773 GGAATGCCAGTAAGTTCGAATTTACCGAGCAAGTTGTTGTCCTTGGTGCGAGCACGTTCA 234714 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT- 517452 || ||| | | ||||| || ||| || || || || |||| | || | ||| Sbjct 234713 CCTTCGTAGACCTGGATCAAGACACCAGGCTGGTTGTCGGAGAAAGTAGAGAA-AGTCTC 234655 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 ||| || || || || || ||||| | | || | | |||||| | ||||| || Sbjct 234654 GGACTTCTTGGTTGGGATAGTGGTGTTGCGCTTGATGAGAGGGGTCATGACGCCACCAGC 234595 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 517570 || || | || | |||||||| | || || | || | || | || | || || Sbjct 234594 AGTCTCGATGCCCAAGGAAAGAGGGGCAACGTCGAGAAGCAAGATTTCGTTGGTAGACTT 234535 Query 517571 TCATCA-GTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628 | | || | ||| |||||| |||| || || | ||||||||| || ||||| || | Sbjct 234534 GGAGGAAGTATCGCCAGACAAGA-TAGCAGCCTGGACAGCAGCACCGTAGGCAACGGCCT 234476 Query 517629 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 517688 | ||||| || | || | || | | || |||||||| || | || | | | || Sbjct 234475 CGTCAGGGTTGATAGACTTGTTGGGCTCCTTGCCATTGAAGAAGTCGGAGACCATCT-TC 234417 Query 517689 TT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747 | | ||| || ||||| | || || || || || || ||||| || || |||||| Sbjct 234416 TGGATCTTGGGGATACGGGTAGAACCACCGACCAAGACGATTTCGTGGACGGAAGATTTA 234357 Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCT 517807 || | ||| | || | || ||||| || || | | | || | || Sbjct 234356 TCGATTTTAGCGTCACGGAGGACACGCTCAACAGGCTCCATGGTGGAACGGAAGAGATCC 234297 Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGA 517865 |||||||| ||||| || | ||| || || | || || |||| || ||| Sbjct 234296 TGGCAAAGTTCCTCGAAACGGGCACGAGT--GATGGAAGTGTAGAAGTCAACACCCTCGT 234239 Query 517866 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 517925 | | ||| || | |||||| | ||| || | | ||| || || | || || ||||||| Sbjct 234238 AGAGAGAGTCGATTTCAATAGAAGTCTGGGCAGCAGACGAGAGAGTGCGCTTGGCACGTT 234179 Query 517926 CACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT--CAAATCTGTTTTATA 517983 | || || || | || | || | ||| || |||| || ||| | || | Sbjct 234178 CGCAAGCAGTGCGGAGGCGGCGAAGGGCGCGAGC--ATTGGAGGACAGATCCTTCTTGTG 234121 Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 || | |||||| || | ||| | | |||||||| || || ||||||||||| || Sbjct 234120 CTTACGCTTGAATTCGTTGACAAAGTGGTTGACAAGACGGTTGTCGAAATCTTCACCACC 234061 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 ||| | || | || | |||| | | || | || | || || || | | |||||| Sbjct 234060 CAAGTGCGTGTCACCAGCAGTAGATTTGACCTCAAAGATACCCTCCTCGATGGTCAAAAG 234001 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 || ||||| || |||||||||| |||||| ||||| ||||| ||| || Sbjct 234000 AGAAACATCGAAAGTACCACCACCCAAATCAAAGATAAGGACATTGCGTTCGCCCTCAGC 233941 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 || || || | || ||||||| |||||| ||||| || || || || |||| | ||| Sbjct 233940 TTTCTTGTCCAAGCCGTACGCAATAGCAGCGGCAGTAGGCTCGTTGATGATTCGAAGAAC 233881 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 ||||| || ||||| || ||||| || ||||| || | || || || || || || Sbjct 233880 GTTAAGGCCGGCAATCAGACCAGCATCCTTGGTGGCCTGACGCTGAGAGTCATTGAAGTA 233821 Query 518284 TGCAGGAACAGTAATAACGGCAT 518306 ||||| || |||| || |||| Sbjct 233820 AGCAGGGACGGTAACGACAGCAT 233798 >seq1 Length=3145143 Score = 123 bits (136), Expect = 2e-22 Identities = 192/274 (70%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 |||||||||||||| ||||| | ||||| || | |||||| |||| |||| ||| Sbjct 1048163 TCAAAATCTTCACCACCCAAATGAGTATCACCAGCCGTAGCCAAGACTTCGAAAGCACCA 1048104 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | |||| || | || || |||||| ||| |||||||| | ||| | | || Sbjct 1048103 TTATCAATGGAAAGAACAGACACATCAAAGGTACCACCACCAAGATCGTACACAA----- 1048049 Query 518147 TTCATTTC---TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 | |||| || ||| | | ||||||||||| || |||| ||| || || || || Sbjct 1048048 -TGATTTGACGTTCGTCACCGGTCTTATCAAGACCGTAGGCAATAGCGGCGGCGGTAGGC 1047990 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| | || | | ||||| | ||| ||||| |||| ||||| || ||||||||| Sbjct 1047989 TCATTGACAACACGAAGGACATTCAAACCGGCAATAGTTCCGGCATCCTTGGTGGCTTGT 1047930 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 518297 ||||| ||| || || || ||||| ||||||| Sbjct 1047929 CTTTGGTTATCATTGAAGTAGGCAGGGACAGTAA 1047896 Score = 100 bits (110), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| |||||||||| ||| | || || |||||| ||| ||||| || || Sbjct 232292 ACATCGAAGGTACCACCACCCAAATCGTAGATGAGAACATTCCGTTCCTTGTC--GGATT 232349 Query 518168 TTATCAAGACCA-----TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 | || ||| || |||| ||||||||||| || || |||||||| | | || Sbjct 232350 TCCCGGAGCCCAATCCATAGGCAATGGCAGCAGCAGTAGGCTCGTTAATAATACGGAGAA 232409 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 | || || ||||| || || |||||||| ||||| || | ||| ||||| |||| Sbjct 232410 CGTTCAGTCCAGCGATGGCACCGGCATCTTTTGTGGCCTGACGTTGGTTGTCGTTGAAAT 232469 Query 518283 ATGCAGGAACAGTAATAACGGC 518304 | || |||||||||||||| || Sbjct 232470 AGGCTGGAACAGTAATAACAGC 232491 >seq3 Length=1865056 Score = 100 bits (110), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 |||||||||||||| || || ||||||||||||||||||||| ||| | || || ||| Sbjct 703050 GGTAAAGAAGGTCGGCTTCGACAAAATTTGATGGGAAAACGTGTTGATTTTTCAGCCCGT 702991 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 || ||||| || ||| |||||| | |||| | |||||||| ||||| | | |||| Sbjct 702990 ACGGTTATAACGGGTGACCCCAATTTGTCTCTGGACGAAGTTGGCGTTCCCATCAGTATT 702931 Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATT 669019 || ||| || || | | ||| |||| || |||||||| Sbjct 702930 GCGCAAACACTGACATATCCGGAAGTTGTTACCCCCTATAATATT 702886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780820464691534