Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9 163 6e-35 seq5 100 6e-16 seq2 87.8 4e-12 >seq9 Length=1275601 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||||||||| || || ||||||||||| || |||||||| | || || | || || Sbjct 1015630 CAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGACAGTGTGCGGCCGTC 1015571 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||| || ||||| |||||||| || ||||| |||||||| || || |||||||| || Sbjct 1015570 CTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATC 1015511 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| ||| |||||||| || || || || ||| || ||||| | || | || Sbjct 1015510 TTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAACTTCTAATGTGATTGT 1015451 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||||||||| | |||||| Sbjct 1015450 TTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || ||||| |||||||| | || || | ||||| ||| Sbjct 1015398 ACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCATCCTCG 1015339 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| |||||||| | |||||| ||||| || || |||||||||||||| || Sbjct 1015338 AGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGGATGCCTTCTTTGTCCTGG 1015279 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || || || ||||| || ||| || || |||||||||| ||||| Sbjct 1015278 ATCTTGGTTTTCACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTAATAGTCTTG 1015219 Query 195112 CCTGTCAAAGTTTTTAC 195128 || || | ||| || || Sbjct 1015218 CCAGTAAGAGTCTTGAC 1015202 Score = 120 bits (132), Expect = 7e-22 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| || || || ||||| |||| || || | |||||||| ||||| ||||| ||||| Sbjct 1015094 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCAGCGAA 1015035 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 || | ||||||||||||||||| ||||| || |||||||| || || ||| || || Sbjct 1015034 AATCAAGCGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTCTTAACATT 1014975 Query 195069 CTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 |||||||| | | | || || || |||||||| | ||||| || |||| || || Sbjct 1014974 ATCAATGGTATCGCTGGAC--TCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 1014917 Query 195127 ACGAACACTTGCAT 195140 ||||| | ||||| Sbjct 1014916 ACGAAGATCTGCAT 1014903 >seq5 Length=1732373 Score = 100 bits (110), Expect = 6e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| ||||| |||||| | ||| | ||||| || |||||||| || ||||| || Sbjct 840094 TTTTGGATATTATAATCGCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATC 840153 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| ||||||||||| ||||| || || ||||| ||||| || |||||| || ||| Sbjct 840154 AATCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTATCA 840213 Query 195073 ATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || || || ||| || || ||||| || | ||||| || || | || || ||| Sbjct 840214 ATTGTATCGCTCGA---CTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACG 840270 Query 195130 AA 195131 || Sbjct 840271 AA 840272 >seq2 Length=1931404 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| || | || || | ||||| || Sbjct 802217 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 802158 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || || || || ||||| || || ||||| || |||||| || Sbjct 802157 AGCTGTTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTAGA 802098 Query 195052 ATTTTT 195057 |||| Sbjct 802097 GGTTTT 802092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481045605913