Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 109 4e-19 seq2 84.2 1e-11 >seq9 Length=1275601 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 |||||||| | ||| |||||||||||||| | ||||| |||||||| || || ||||| Sbjct 1015875 TTTCCTCCACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAGTCT 1015816 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 ||||| | || |||| || || || || |||||||| || || || || ||||| | Sbjct 1015815 GAAAGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGT 1015756 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTC 34930 || | || ||||| || || | || ||| ||||| | |||| || | || Sbjct 1015755 GGAATACCTTCCTTATC-CTGAATTTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTC 1015697 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || ||||| || || || || || || ||||| ||||||||| Sbjct 1015696 AACTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCATA 1015645 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || ||||| ||||| ||||| || ||| | || |||| || Sbjct 1015111 ACCAAGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 1015052 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || || || || | ||||| |||||| | || | ||||||||||| Sbjct 1015051 AGCTGTTTACCAGCGAAAATCAAGCGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGG 1014992 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || || |||| || || | || ||| || || | ||| ||||| Sbjct 1014991 ATCTTAGTCTTAAC--AT--TATCAATGGTATCGCTGGACTCGACCTCAAGGGTGATGGT 1014936 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| || |||||||||||| Sbjct 1014935 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 1014902 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||||| |||||| | ||| | || ||||| || ||||| || || || Sbjct 1015644 CCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGAC 1015585 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || || ||||| ||||| || ||||| |||||||||||| | || Sbjct 1015584 AGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGG 1015525 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| ||||||| | |||| ||| | |||||| Sbjct 1015524 ATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAACT 1015465 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || |||||||| || | || || || || || |||||| Sbjct 1015464 TCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCATA 1015417 >seq2 Length=1931404 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| |||||||| ||| | || |||| |||||||| Sbjct 802212 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTG 802153 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||| ||||| || || || || |||||||| | || | ||||||||||| Sbjct 802152 TTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 802102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633445697592