Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 165 9e-36 seq6 98.7 1e-15 >seq7 Length=1353353 Score = 165 bits (182), Expect = 9e-36 Identities = 458/698 (66%), Gaps = 12/698 (2%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| || ||| ||||| || || || |||| | | |||| || || ||||| Sbjct 416209 TATAGCTGCTCGAATTCGTCTCCGTAGACATCGGCGAGTCCAGATGCCTCGTTTGGACAG 416150 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | | || |||||| ||| || | || | |||| || | || || |||| || Sbjct 416149 AATAGTGTCCAATCGCCATTCTTCTCAACCCGTTTCATGAACAAGTCGGGAGTCCAGAGG 416090 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA---AGTTCA 48293 || | || | ||| | | ||| | |||||| || ||| ||| |||| || || Sbjct 416089 GCGAGGAAAAGATCTCGGGCTCTCACTTCTTCTTTACCATGATT---TTTACGGAGGTCC 416033 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | ||| || | || |||| ||||| ||||| | ||| || || | |||| || ||| Sbjct 416032 AAAAACTCAAATACGTCAGAGTGCCAAGGTTCAAGATAAATAGCAAAAGCACCAGGGCGT 415973 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| || || ||||| | ||||||||||||||||||| | || | | ||| || | Sbjct 415972 TTATTGCCGCCCTGATCCACATATCTGGCAGTATTGTTAAAGACACGAAGCATGGGAATG 415913 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 || ||||| || ||||| ||||| | ||| || ||| | || | || | Sbjct 415912 ATCCCATTAGAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTTGCACGGATTCGGTGA 415853 Query 48474 A--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 | ||| | || ||||| || || | || || || |||||||| || || |||| Sbjct 415852 ACGTTG--AGTCCAATACCCCCAGCAGTCTTGGAAATCAGAGCACATGTCTTCAGTGTAT 415795 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 |||| || || || |||||||| || |||||| | || || || || ||| || | Sbjct 415794 CATAGATCCCCTCAATACTATCCTCCTTCATATCAATAAGGAAGCAGGAAGCCATCTGTG 415735 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | ||| ||||| | ||| || | ||| ||||| || || |||| |||| | || | Sbjct 415734 GTTGAGGTGTTCCCGCATTGAAAAGTGTGGGAGAAGCGTGGGTAAAAAATTTTTGGGACA 415675 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACAC 48711 || | ||||| ||||| | ||| || ||| ||||| ||||| | | || | Sbjct 415674 TCAGGTGGTATGTCTCAATCGCTTTATCAATGTCCTCATGATGAATACCAACGGCAACGC 415615 Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATT 48771 |||| | ||||| || || | |||| ||| |||| || ||| | | ||||| || Sbjct 415614 GCATAATCATATGCTGCGGACGTTCAGCAACTTTGCCGTTGATTCTTAGTAGATACGACC 415555 Query 48772 TTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 | |||| ||| || || ||||| || | ||| ||||| Sbjct 415554 TCTCCAGTGTCTTGAACCCAAAGTACTGGTAGTTGAAA 415517 >seq6 Length=1499889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 226/335 (67%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 19186 GTCTCTATAGAATTAAATAGATACATACGCT-CATCTGTATCTTTAACATATGCATCTAT 19244 || || |||| || ||| ||||| |||| | | || || ||||| | |||| || || Sbjct 78451 GTATCGATAGCATCAAAGAGATAGGTACGTTGCTTCGGT-TCTTTGATGTATGTGTCAAT 78509 Query 19245 CAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACA 19304 || | ||| |||||||||| || ||||| || ||||||||||| || ||||| Sbjct 78510 CAGAAGGGAGTATGTTTCTGAATGGATGTTTTCCATCATGATCTGAAATCCATAGAAACA 78569 Query 19305 TCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTAT 19364 | || |||| || || ||||||| || || | || || | || || || || || Sbjct 78570 ACGGGCCTCTGGGATTTGGACTTCACCACTGAAGCGCTCCACAAGGTTCTCGTTGACAAT 78629 Query 19365 TCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--T 19419 ||| ||| ||| || || ||||| | ||| | | ||| | | | ||||| | Sbjct 78630 TCCGTCAGAAGCGGCGAAGAATGCCAGCACACGAGAGACAAAGTATCGCTCGTCATCATT 78689 Query 19420 GAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAA 19479 ||| || || ||||| || | || |||||| || || || | || ||| | ||||| Sbjct 78690 GAGTTTGTTG--TTCCAGTCGTGAAGATCTTTGGACAAGTCGATCTCCTCAGCAGTCCAG 78747 Query 19480 AAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||||| || || || || || ||||| | ||| || Sbjct 78748 AAAGATGCTTCAGCCTTCTTGTACATTTGCCAGAT 78782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||| || || |||||||| | | |||| || || || || || | Sbjct 78172 CAAGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAAGTAAGG 78231 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| || || | || ||||||||||| ||||||||||| || ||| ||||| Sbjct 78232 CCAGGCATGAGACCACGCTTCTTTAACCAGAAAATAGAAGCAAAAGAACCACTGAAGAAG 78291 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 ||||| || || || || ||||||| || | | | || | | | ||| ||| || Sbjct 78292 ATACCCTCAACAGCGGCGAAAGCAATAAGACGCTGTGCAAATGTGGATTCACTATCCTGG 78351 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTT 19169 |||||| | ||||| || || ||||| Sbjct 78352 ATCCATCGAATAGCCCAGTCGGCTTTCTT 78380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108525971960