Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq8 143 2e-28
seq13 107 2e-17
seq1 107 2e-17
seq9 102 7e-16
>seq8
Length=1298916
Score = 143 bits (158), Expect = 2e-28
Identities = 356/536 (66%), Gaps = 7/536 (1%)
Strand=Plus/Plus
Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112
|||||||||| ||||| || || |||||| | ||||| || |||| || ||||||| |
Sbjct 233453 TTGAAATTATCGCCAACGACCAGGGTAACCGTACTACGCCCTCTTTCGTGGCTTTCACAG 233512
Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172
| || || | || | |||||||| ||||| | |||| | | || || || || |
Sbjct 233513 ATACCGAGCGCTTGATCGGTGATGCCGCAAAGAACCAAGTCGCCATGAACCCCACAAACA 233572
Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232
|| |||| ||||| |||||| | || || | | || || ||| | || ||||| |
Sbjct 233573 CTGTTTTCGATGCAAAACGTCTTATCGGCCGCAAATTCAACGATGCTGAAGTCCAGGCTG 233632
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291
|||||||||| | || ||| | || | | | || ||||| || | | |
Sbjct 233633 ATATGAAGCACTTCCCCTTCAAGATCATCGACAAAGCCGGCAAACCCGTCATCCAGGTCG 233692
Query 550292 A-CTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| ||| | || | || ||||| | || ||| |||| || || ||||| || |
Sbjct 233693 AGTTCA--AGGGCGAGGAGAAGCAATTCACTCCCGAAGAAATCTCGTCGATGGTCTTGAC 233750
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| ||| |||| ||| |||| |||| || | |||| || | ||
Sbjct 233751 CAAGATGCGTGAAACTGCCGAAGCTTACCTTGGCGGCACTGTCAACAATGCTGTCGTTAC 233810
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
|| || || || || |||||||| || ||||| || || || |||||||| | |||||
Sbjct 233811 CGTCCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCTGATTGC 233870
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|| ||||| |||||||| || ||||| || |||||||| ||||| |||| || || |
Sbjct 233871 CGGCCTTAACGTTCTTCGAATCATCAACGAGCCTACTGCCGCTGCTATTGCGTACGGCTT 233930
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583
|| || | ||| |||| ||||| || |||||||||| |||| ||||
Sbjct 233931 GGACAAGAAAGCTGAGGGCGAACGCAATGTCCTTATCTTTGATTTGGGTGGTGGTA 233986
>seq13
Length=857040
Score = 107 bits (118), Expect = 2e-17
Identities = 99/124 (80%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || || || || || |||||||| |||||||||||||| || ||||| || | |||
Sbjct 438440 ACAGTTCCCGCCTACTTCAATGACTCTCAACGTCAAGCTACGAAGGATGCAGGTCAGATT 438499
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
||||| || ||||| |||||| | |||| || || ||||||||||| ||||| |||||
Sbjct 438500 GCTGGTCTGAATGTGCTTCGTGTCGTCAACGAGCCAACTGCTGCTGCTCTTGCCTATGG- 438558
Query 550529 CTTG 550532
||||
Sbjct 438559 CTTG 438562
>seq1
Length=3145143
Score = 107 bits (118), Expect = 2e-17
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| ||||| ||||| || ||| |||||||| || || ||||||||
Sbjct 232491 GCTGTTATTACTGTTCCAGCCTATTTCAACGACAACCAACGTCAGGCCACAAAAGATGCC 232432
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| || |||||||| || ||||| |||||||| || || |||||||||||||| ||
Sbjct 232431 GGTGCCATCGCTGGACTGAACGTTCTCCGTATTATTAACGAGCCTACTGCTGCTGCCATT 232372
Query 550520 GCATATGGA 550528
|| ||||||
Sbjct 232371 GCCTATGGA 232363
>seq9
Length=1275601
Score = 102 bits (112), Expect = 7e-16
Identities = 153/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
||||| || |||||| || | ||||| || |||||||||| || || | || |
Sbjct 1015626 ACAAGGTGGAGGGTAGACTCTTTTTGG--ATGTTGTAATCAGACAGTGTGCGGCCGTCCT 1015569
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| |||||||| ||||| || || || | |||||| || || || || |||||||||||||
Sbjct 1015568 CGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTT 1015509
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTT 563442
|||| ||| ||| || || || ||||||| || | | ||| | || | |||
Sbjct 1015508 GAATCTTTGTTTTGACGTTGTCGATCGTATCAG-AAGACTCAACTTCTAATGTGATTGTT 1015450
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || || | ||||| |||||||||||||||
Sbjct 1015449 TTTCCGGTTAAGGTTTTTACGAAAATTTGCATA 1015417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029293937504110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |