Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8 143 2e-28 seq13 107 2e-17 seq1 107 2e-17 seq9 102 7e-16 >seq8 Length=1298916 Score = 143 bits (158), Expect = 2e-28 Identities = 356/536 (66%), Gaps = 7/536 (1%) Strand=Plus/Plus Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 |||||||||| ||||| || || |||||| | ||||| || |||| || ||||||| | Sbjct 233453 TTGAAATTATCGCCAACGACCAGGGTAACCGTACTACGCCCTCTTTCGTGGCTTTCACAG 233512 Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172 | || || | || | |||||||| ||||| | |||| | | || || || || | Sbjct 233513 ATACCGAGCGCTTGATCGGTGATGCCGCAAAGAACCAAGTCGCCATGAACCCCACAAACA 233572 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 || |||| ||||| |||||| | || || | | || || ||| | || ||||| | Sbjct 233573 CTGTTTTCGATGCAAAACGTCTTATCGGCCGCAAATTCAACGATGCTGAAGTCCAGGCTG 233632 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291 |||||||||| | || ||| | || | | | || ||||| || | | | Sbjct 233633 ATATGAAGCACTTCCCCTTCAAGATCATCGACAAAGCCGGCAAACCCGTCATCCAGGTCG 233692 Query 550292 A-CTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | ||| | || | || ||||| | || ||| |||| || || ||||| || | Sbjct 233693 AGTTCA--AGGGCGAGGAGAAGCAATTCACTCCCGAAGAAATCTCGTCGATGGTCTTGAC 233750 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || ||| |||| ||| |||| |||| || | |||| || | || Sbjct 233751 CAAGATGCGTGAAACTGCCGAAGCTTACCTTGGCGGCACTGTCAACAATGCTGTCGTTAC 233810 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || || || || || |||||||| || ||||| || || || |||||||| | ||||| Sbjct 233811 CGTCCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCTGATTGC 233870 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || ||||| |||||||| || ||||| || |||||||| ||||| |||| || || | Sbjct 233871 CGGCCTTAACGTTCTTCGAATCATCAACGAGCCTACTGCCGCTGCTATTGCGTACGGCTT 233930 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583 || || | ||| |||| ||||| || |||||||||| |||| |||| Sbjct 233931 GGACAAGAAAGCTGAGGGCGAACGCAATGTCCTTATCTTTGATTTGGGTGGTGGTA 233986 >seq13 Length=857040 Score = 107 bits (118), Expect = 2e-17 Identities = 99/124 (80%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || |||||||| |||||||||||||| || ||||| || | ||| Sbjct 438440 ACAGTTCCCGCCTACTTCAATGACTCTCAACGTCAAGCTACGAAGGATGCAGGTCAGATT 438499 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || ||||| |||||| | |||| || || ||||||||||| ||||| ||||| Sbjct 438500 GCTGGTCTGAATGTGCTTCGTGTCGTCAACGAGCCAACTGCTGCTGCTCTTGCCTATGG- 438558 Query 550529 CTTG 550532 |||| Sbjct 438559 CTTG 438562 >seq1 Length=3145143 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| || ||| |||||||| || || |||||||| Sbjct 232491 GCTGTTATTACTGTTCCAGCCTATTTCAACGACAACCAACGTCAGGCCACAAAAGATGCC 232432 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || ||||| |||||||| || || |||||||||||||| || Sbjct 232431 GGTGCCATCGCTGGACTGAACGTTCTCCGTATTATTAACGAGCCTACTGCTGCTGCCATT 232372 Query 550520 GCATATGGA 550528 || |||||| Sbjct 232371 GCCTATGGA 232363 >seq9 Length=1275601 Score = 102 bits (112), Expect = 7e-16 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||| || |||||| || | ||||| || |||||||||| || || | || | Sbjct 1015626 ACAAGGTGGAGGGTAGACTCTTTTTGG--ATGTTGTAATCAGACAGTGTGCGGCCGTCCT 1015569 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | |||||||| ||||| || || || | |||||| || || || || ||||||||||||| Sbjct 1015568 CGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTT 1015509 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTT 563442 |||| ||| ||| || || || ||||||| || | | ||| | || | ||| Sbjct 1015508 GAATCTTTGTTTTGACGTTGTCGATCGTATCAG-AAGACTCAACTTCTAATGTGATTGTT 1015450 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || | ||||| ||||||||||||||| Sbjct 1015449 TTTCCGGTTAAGGTTTTTACGAAAATTTGCATA 1015417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029293937504110