Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8 131 1e-24 seq5 91.5 1e-12 seq1 89.7 3e-12 seq9 86.0 4e-11 >seq8 Length=1298916 Score = 131 bits (144), Expect = 1e-24 Identities = 528/823 (64%), Gaps = 13/823 (2%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 || ||||| || | || | |||||||||||||| || || | ||||| | || | Sbjct 234040 ACTGCTGGTGACACGCACTTGGGTGGTGAAGATTTCGACAACCGTCTTGTCAACCAC--T 234097 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAA 475484 ||| | || |||||| | || | || ||||| || | |||| || | Sbjct 234098 TTGTCAACGAATTCAAGCGTAAGCACAAGAAGGATCTGTCCTCCAATGCTCGCGCCCTTC 234157 Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 | || || | |||||||| |||||||| ||||| |||| || |||||| | || ||| Sbjct 234158 GCCGCCTCCGCACTGCTTGCGAACGTGCCAAGCGCACTCTCTCGTCTGCTGCCCAGACTT 234217 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 || ||||| | || ||||| | || || |||| | | ||| || || | || Sbjct 234218 CTATTGAAATCGACTCTCTCTACGAGGGTGTTGACTTCTACACTTCCATCACTCGTGCCC 234277 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 || || || |||| |||||||| | || || || || ||||| | || | Sbjct 234278 GTTTCGAGGAACTTTGCCAGGATCTCTTCCGTTCCACCATGGAGCCTGTTGAGCGTGTCC 234337 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 || | || ||||| | || ||||| ||||| ||||| || | || || ||||| | Sbjct 234338 TCCGTGACGCTAAAATCGATAAATCTTCCGTCCACGAAATCGTCTTGGTCGGTGGTTCTA 234397 Query 475725 CAAGAATTCCAAAAATAAGAGAA-ATGCTTTCATCATATTTTAATGGTAAAAAGTTAAAT 475783 | | || || || || |||| ||| | || | || ||||| || || || Sbjct 234398 CCCGTATCCCCAAGATCC-AGAAGATGGTCTCCGACTTCTTCAATGGCAAGGAGCCCAAC 234456 Query 475784 GAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 |||| || || ||||| || || ||||| || || ||||||||||| || ||||| | Sbjct 234457 --AAGTCTATCAACCCTGACGAGGCCGTTGCCTACGGTGCTGCTGTCCAGGCTGCTATCT 234514 Query 475842 TATCAGGTCAATCAGACGAGAA-ACTA--AATAATATTGTACTTGTTGACGTAACTCCAC 475898 | || || | | | || ||| || | || | ||| | ||||| | || | Sbjct 234515 TGTCTGGCGATACTTCCTCCAAGTCTACCAACGAAATCTTGCTTCTCGACGTTGCCCCTC 234574 Query 475899 TTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTC 475958 |||| || || | || || | ||| || | ||||| ||| || | | || || Sbjct 234575 TTTCCTTGGGCATCGAGACTGCTGGTGGCGTCATGACCCCTCTCATCAAGCGCAACACCA 234634 Query 475959 CTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018 |||||||| ||| || || | || || |||| || || || || | ||| Sbjct 234635 CTATCCCAACCAAGAAGTCCGAGACTTTCTCTACTTTCTCCGACAACCAGCCTGGTGTCT 234694 Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078 ||||| ||| ||||||||| | ||| || || || ||| || || | | Sbjct 234695 TGATCCAGGTCTACGAAGGTGAACGTGCTCGCACCAAGGACAACAACTTGCTCGGTAAAT 234754 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 | | ||| || ||||||||||||||| | || |||||||| || ||||| ||||| | Sbjct 234755 TCGAACTTACTGGCATTCCTCCTGCTCCCCGTGGTGTTCCTCAGATCGAAGTCACTTTCG 234814 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 || |||| || |||||||| | || || ||||| ||| || Sbjct 234815 ATGTTGACGCCAATGGTATCATGAACGTCTCTGCTCTTGAGAA 234857 >seq5 Length=1732373 Score = 91.5 bits (100), Expect = 1e-12 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 480593 ATTATAATCAGCT-AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTT 480651 ||||||||| ||| | ||| | ||| ||||| |||||||| || ||||| | || | Sbjct 840102 ATTATAATC-GCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAATCGCT 840160 Query 480652 GTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTAT 480711 |||| || || ||||| || |||||||| |||||||| |||||| ||||| |||| Sbjct 840161 GTTGGTCTGGCGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTATCAATTGTAT 840220 Query 480712 CAGT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | | | | | |||| || || || || |||||||| ||||||||||| Sbjct 840221 CGCTCGACTCGACCT-CAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAA 840272 >seq1 Length=3145143 Score = 89.7 bits (98), Expect = 3e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || || || || |||||| ||| | ||||| || || ||||| |||| | Sbjct 1047896 TTACTGTCCCTGCCTACTTCAATGATAACCAAAGACAAGCCACCAAGGATGCCGGAACTA 1047955 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||| | ||||| | ||| || | ||||| || || || ||||| |||| || | Sbjct 1047956 TTGCCGGTTTGAATGTCCTTCGTGTTGTCAATGAGCCTACCGCCGCCGCTATTGCCTACG 1048015 Query 474864 GTCTTGATAAGA 474875 |||||||||||| Sbjct 1048016 GTCTTGATAAGA 1048027 >seq9 Length=1275601 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||||||||| || ||||| || || || ||||| || || ||||| |||||||| Sbjct 1015801 ATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGAATACCTTCCTT 1015742 Query 480677 GTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 || ||||| |||||| |||||| ||||| || || | | | ||| | || | Sbjct 1015741 ATCCTGAAT-TTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTCAACTTCTAATGTGA 1015683 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || || || || ||||| || Sbjct 1015682 TGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTG 1015649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177527100772