Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 123 7e-23 seq7 114 4e-20 seq12 95.1 4e-14 seq3 84.2 6e-11 >seq6 Length=1499889 Score = 123 bits (136), Expect = 7e-23 Identities = 164/224 (73%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG--- 133493 ||||||| ||| |||||| | |||||||||||| |||||||||||| | ||| Sbjct 78394 TTCCTTGCATTCGCAAGAAAGCCGACTGGGCTATTCGATGGATCCAGGATA---GTGAAT 78338 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | ||||| ||||| ||||||| || | || ||||| || || ||||||||| Sbjct 78337 CCACATTTGCACAGCGTCTTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTT 78278 Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 | || ||| |||||||| ||| | || ||||||||| | | ||||| || ||| || Sbjct 78277 C-TTTTGCTTCTATTTTCTGGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTCTCC 78219 Query 133613 AACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||| || || || | ||||||| |||||||| || ||||| Sbjct 78218 AACGAGCTGATCTCTCGTGACGAGGGTCTTCACACTGACTTTGC 78175 >seq7 Length=1353353 Score = 114 bits (126), Expect = 4e-20 Identities = 234/347 (67%), Gaps = 3/347 (1%) Strand=Plus/Minus Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGA 156083 || || ||||| ||||||||| |||| | | ||||| |||||||| ||||| | Sbjct 416005 GGTTCAAGATAAATAGCAAAAGCACCAGGGCGTTTATTGCCGCCCTGATCCACATATCTG 415946 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 ||||| || || ||||||| ||||| ||||| || ||||| || | |||||| ||||| Sbjct 415945 GCAGTATTGTTAAAGACACGAAGCATGGGAATGATCCCATTAGAGGAGCCATTTGTTCCT 415886 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 ||| | || |||| || || | |||| | ||||||||||| || | Sbjct 415885 GCAATGTAGGAGCCAGTTGCACGGATTCGGTGAACGTTGAGTCCAATACCCCCAGCAGTC 415826 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || ||||| |||| ||| ||| | |||| | || || |||||| ||| || | | Sbjct 415825 TTGGAAATCAGAGCACATGTCTTCAGTGTATCATAGATCCCCTCAATACTATCCTCCTTC 415766 Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 || | || |||| ||| | || ||| | |||||||| || ||||| ||||| Sbjct 415765 ATATCAATAAGGAAGCAGGAAGCCATCTGTGGTTGAGGTGTTCCCGCATTGAAAAGTGTG 415706 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 || | || || ||||| | || | ||||| | ||||||||| Sbjct 415705 GGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGGTATGTCTC 415659 >seq12 Length=982140 Score = 95.1 bits (104), Expect = 4e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||||| |||||||||||||| || | || |||| |||| || ||| || Sbjct 522008 TTGCCAATGGCATCGATTTCGTCAATGAAGATTATGCAAGGAGTGTTTTTTCGCGCGTTT 521949 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || | || | ||||| |||| |||| ||||||| ||||||| || || || ||| Sbjct 521948 GCGAAAAGATCACGAACACGAGATGGCCCAACACCAACAAACATTTCCACGAACTCTGAA 521889 Query 289147 GCGGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 || || |||| |||| || | ||||| ||| ||| |||| || ||||| Sbjct 521888 CCGCTGACGCTGAA-AAATGGAACGCCAGACTCGCCGGCTGTGGCCTTCGCTAGTAGTGT 521830 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 |||||| || || ||||| || Sbjct 521829 CTTACCGGTACCTGGTGGGCC 521809 >seq3 Length=1865056 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | || || ||||| | || ||||| ||| |||| |||||||||| Sbjct 700709 AGAATTTCCTTTAGGCGAGGGACACCTAGAGTAACGTT---CTTAGACGAAACACCAGCA 700765 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | || || | || || |||||| |||||| || | Sbjct 700766 AAATGGAAAGTATTAAGCGTCATCTGTGTTGCCGGTTCTCCAATAGATTGTGCAGCTAAG 700825 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||||| ||||| Sbjct 700826 ACTCCAACCATTTCGCCTGG 700845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816864551143