Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 7e-23
seq7 114 4e-20
seq12 95.1 4e-14
seq3 84.2 6e-11
>seq6
Length=1499889
Score = 123 bits (136), Expect = 7e-23
Identities = 164/224 (73%), Gaps = 8/224 (4%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG--- 133493
||||||| ||| |||||| | |||||||||||| |||||||||||| | |||
Sbjct 78394 TTCCTTGCATTCGCAAGAAAGCCGACTGGGCTATTCGATGGATCCAGGATA---GTGAAT 78338
Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553
| | ||||| ||||| ||||||| || | || ||||| || || |||||||||
Sbjct 78337 CCACATTTGCACAGCGTCTTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTT 78278
Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612
| || ||| |||||||| ||| | || ||||||||| | | ||||| || ||| ||
Sbjct 78277 C-TTTTGCTTCTATTTTCTGGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTCTCC 78219
Query 133613 AACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
||||| || || || | ||||||| |||||||| || |||||
Sbjct 78218 AACGAGCTGATCTCTCGTGACGAGGGTCTTCACACTGACTTTGC 78175
>seq7
Length=1353353
Score = 114 bits (126), Expect = 4e-20
Identities = 234/347 (67%), Gaps = 3/347 (1%)
Strand=Plus/Minus
Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGA 156083
|| || ||||| ||||||||| |||| | | ||||| |||||||| ||||| |
Sbjct 416005 GGTTCAAGATAAATAGCAAAAGCACCAGGGCGTTTATTGCCGCCCTGATCCACATATCTG 415946
Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143
||||| || || ||||||| ||||| ||||| || ||||| || | |||||| |||||
Sbjct 415945 GCAGTATTGTTAAAGACACGAAGCATGGGAATGATCCCATTAGAGGAGCCATTTGTTCCT 415886
Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203
||| | || |||| || || | |||| | ||||||||||| || |
Sbjct 415885 GCAATGTAGGAGCCAGTTGCACGGATTCGGTGAACGTTGAGTCCAATACCCCCAGCAGTC 415826
Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263
|| ||||| |||| ||| ||| | |||| | || || |||||| ||| || | |
Sbjct 415825 TTGGAAATCAGAGCACATGTCTTCAGTGTATCATAGATCCCCTCAATACTATCCTCCTTC 415766
Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323
|| | || |||| ||| | || ||| | |||||||| || ||||| |||||
Sbjct 415765 ATATCAATAAGGAAGCAGGAAGCCATCTGTGGTTGAGGTGTTCCCGCATTGAAAAGTGTG 415706
Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370
|| | || || ||||| | || | ||||| | |||||||||
Sbjct 415705 GGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGGTATGTCTC 415659
>seq12
Length=982140
Score = 95.1 bits (104), Expect = 4e-14
Identities = 143/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
|| |||| ||||| |||||||||||||| || | || |||| |||| || ||| ||
Sbjct 522008 TTGCCAATGGCATCGATTTCGTCAATGAAGATTATGCAAGGAGTGTTTTTTCGCGCGTTT 521949
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|| || | || | ||||| |||| |||| ||||||| ||||||| || || || |||
Sbjct 521948 GCGAAAAGATCACGAACACGAGATGGCCCAACACCAACAAACATTTCCACGAACTCTGAA 521889
Query 289147 GCGGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205
|| || |||| |||| || | ||||| ||| ||| |||| || |||||
Sbjct 521888 CCGCTGACGCTGAA-AAATGGAACGCCAGACTCGCCGGCTGTGGCCTTCGCTAGTAGTGT 521830
Query 289206 CTTACCTGTTCCAGGTGGTCC 289226
|||||| || || ||||| ||
Sbjct 521829 CTTACCGGTACCTGGTGGGCC 521809
>seq3
Length=1865056
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | || || ||||| | || ||||| ||| |||| ||||||||||
Sbjct 700709 AGAATTTCCTTTAGGCGAGGGACACCTAGAGTAACGTT---CTTAGACGAAACACCAGCA 700765
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||||||||| || || | || || | || || |||||| |||||| || |
Sbjct 700766 AAATGGAAAGTATTAAGCGTCATCTGTGTTGCCGGTTCTCCAATAGATTGTGCAGCTAAG 700825
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||||| |||||
Sbjct 700826 ACTCCAACCATTTCGCCTGG 700845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816864551143
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |