Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9 136 3e-27 seq2 111 1e-19 seq5 91.5 1e-13 >seq9 Length=1275601 Score = 136 bits (150), Expect = 3e-27 Identities = 163/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1015114 AGGACCAAGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1015055 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || ||||| |||| ||||| |||||| | || | ||||||||||| Sbjct 1015054 TCAAGCTGTTTACCAGCGAAAATCAAGCGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCT 1014995 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || |||| || || ||| |||||| |||| ||| || Sbjct 1014994 TGGATCTTAGTCTTAAC--AT--TATCAATGGTATCGCTGGACTCGACCTCAAGGGTGAT 1014939 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||| || || |||||||| || ||||||||||| || Sbjct 1014938 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATAAT 1014900 Score = 113 bits (124), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||||||||| || ||||| ||| |||| |||| Sbjct 1015401 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCATCC 1015342 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || |||||||||| |||||||||||| | || | || || ||||| Sbjct 1015341 TCGAGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGGATGCCTTCTTTGTCC 1015282 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||| || || | ||||| ||| | |||||| |||| ||| || Sbjct 1015281 TGGATCTTGGTTTTCAC--AT--TGTCGATGGTATCAGAAGACTCGACCTCAAGGGTAAT 1015226 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967 ||||| || || || ||||| |||| Sbjct 1015225 AGTCTTGCCAGTAAGAGTCTTGACAA 1015200 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||||| || || ||||| | ||| ||| || || ||||| || || || Sbjct 1015644 CCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGAC 1015585 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || || ||||| || ||||||||||| || |||||||||||| | || Sbjct 1015584 AGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGG 1015525 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || ||| ||||||| | |||| ||| | ||| || Sbjct 1015524 ATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAACT 1015465 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || || ||||| || | ||| ||||| || || ||||| Sbjct 1015464 TCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418 >seq2 Length=1931404 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 802220 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 802161 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || |||||||| ||||| || |||||||| | || | ||||||||||| Sbjct 802160 TCCAGCTGTTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 802102 >seq5 Length=1732373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/159 (74%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 34815 TGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCC 34874 |||| |||| || || |||||||||||||| |||| ||| || |||||| |||| | | Sbjct 840119 TGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAATCGCTGTTGGTCTGGCGGAATAC 840178 Query 34875 CCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACA 34930 |||||||||| | || || ||||| || |||| || || | | |||||| Sbjct 840179 CCTCCTTGTCCTGAATCTTGCTCTTGAC--AT--TATCAATTGTATCGCTCGACTCGACC 840234 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||| || |||||||| || ||||||||||| || ||| Sbjct 840235 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAG 840273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692645194141