Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq9 136 3e-27
seq2 111 1e-19
seq5 91.5 1e-13
>seq9
Length=1275601
Score = 136 bits (150), Expect = 3e-27
Identities = 163/219 (74%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| ||||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 1015114 AGGACCAAGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1015055
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || || || ||||| |||| ||||| |||||| | || | |||||||||||
Sbjct 1015054 TCAAGCTGTTTACCAGCGAAAATCAAGCGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCT 1014995
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || || |||| || || ||| |||||| |||| ||| ||
Sbjct 1014994 TGGATCTTAGTCTTAAC--AT--TATCAATGGTATCGCTGGACTCGACCTCAAGGGTGAT 1014939
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
|||||| || || |||||||| || ||||||||||| ||
Sbjct 1014938 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATAAT 1014900
Score = 113 bits (124), Expect = 3e-20
Identities = 150/206 (73%), Gaps = 8/206 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||||||||||||||| || ||||| ||| |||| ||||
Sbjct 1015401 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCATCC 1015342
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || || |||||||||| |||||||||||| | || | || || |||||
Sbjct 1015341 TCGAGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGGATGCCTTCTTTGTCC 1015282
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||| || || | ||||| ||| | |||||| |||| ||| ||
Sbjct 1015281 TGGATCTTGGTTTTCAC--AT--TGTCGATGGTATCAGAAGACTCGACCTCAAGGGTAAT 1015226
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967
||||| || || || ||||| ||||
Sbjct 1015225 AGTCTTGCCAGTAAGAGTCTTGACAA 1015200
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || | ||||| || || ||||| | ||| ||| || || ||||| || || ||
Sbjct 1015644 CCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGAC 1015585
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| | || || ||||| || ||||||||||| || |||||||||||| | ||
Sbjct 1015584 AGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGG 1015525
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || || || || | || ||| ||||||| | |||| ||| | ||| ||
Sbjct 1015524 ATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAACT 1015465
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | || || || ||||| || | ||| ||||| || || |||||
Sbjct 1015464 TCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418
>seq2
Length=1931404
Score = 111 bits (122), Expect = 1e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| |||| ||||||||| ||||| |||||||| ||| |||| ||||
Sbjct 802220 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 802161
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| || || |||||||| ||||| || |||||||| | || | |||||||||||
Sbjct 802160 TCCAGCTGTTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 802102
>seq5
Length=1732373
Score = 91.5 bits (100), Expect = 1e-13
Identities = 117/159 (74%), Gaps = 8/159 (5%)
Strand=Plus/Plus
Query 34815 TGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCC 34874
|||| |||| || || |||||||||||||| |||| ||| || |||||| |||| | |
Sbjct 840119 TGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAATCGCTGTTGGTCTGGCGGAATAC 840178
Query 34875 CCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACA 34930
|||||||||| | || || ||||| || |||| || || | | ||||||
Sbjct 840179 CCTCCTTGTCCTGAATCTTGCTCTTGAC--AT--TATCAATTGTATCGCTCGACTCGACC 840234
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969
|||| || |||||||| || ||||||||||| || |||
Sbjct 840235 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAG 840273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692645194141
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |