Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8 140 2e-27 seq1 127 2e-23 seq3 102 6e-16 >seq8 Length=1298916 Score = 140 bits (154), Expect = 2e-27 Identities = 670/1048 (64%), Gaps = 18/1048 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||||||||| || | ||| || |||||||| || ||||| || || | ||||||| Sbjct 234833 ATACCATTGGCGTCAACATCGAAAGTGACTTCGATCTGAGGAACACCACGGGGAGCAGGA 234774 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | ||| | || || || || || || ||| |||||| Sbjct 234773 GGAATGCCAGTAAGTTCGAATTTACCGAGCAAGTTGTTGTCCTTGGTGCGAGCACGTTCA 234714 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT- 281619 || ||| | | ||||| || ||| || || || || |||| | || | ||| Sbjct 234713 CCTTCGTAGACCTGGATCAAGACACCAGGCTGGTTGTCGGAGAAAGTAGAGAA-AGTCTC 234655 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||| || || || || || ||||| | | || | | |||||| | |||||||| Sbjct 234654 GGACTTCTTGGTTGGGATAGTGGTGTTGCGCTTGATGAGAGGGGTCATGACGCCACCAGC 234595 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 || || | || | |||||||| | || || | || | || | || | || || Sbjct 234594 AGTCTCGATGCCCAAGGAAAGAGGGGCAACGTCGAGAAGCAAGATTTCGTTGGTAGACTT 234535 Query 281738 TCATCA-GTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 | | || | ||| |||||| |||| || || | ||||||||| || ||||| || | Sbjct 234534 GGAGGAAGTATCGCCAGACAAGA-TAGCAGCCTGGACAGCAGCACCGTAGGCAACGGCCT 234476 Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855 | ||||| || | || | || | | || |||||||| || | || | | | || Sbjct 234475 CGTCAGGGTTGATAGACTTGTTGGGCTCCTTGCCATTGAAGAAGTCGGAGACCATCT-TC 234417 Query 281856 TT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 | | ||| || ||||| | || || || || || || ||||| || || |||||| Sbjct 234416 TGGATCTTGGGGATACGGGTAGAACCACCGACCAAGACGATTTCGTGGACGGAAGATTTA 234357 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 || | ||| | || | || ||||| || || | | | || | || Sbjct 234356 TCGATTTTAGCGTCACGGAGGACACGCTCAACAGGCTCCATGGTGGAACGGAAGAGATCC 234297 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGA 282032 |||||||| ||||| || | ||| || || | || || |||| || ||| Sbjct 234296 TGGCAAAGTTCCTCGAAACGGGCACGAGT--GATGGAAGTGTAGAAGTCAACACCCTCGT 234239 Query 282033 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 282092 | | ||| || | |||||| | ||| || | | ||| || || | || || ||||||| Sbjct 234238 AGAGAGAGTCGATTTCAATAGAAGTCTGGGCAGCAGACGAGAGAGTGCGCTTGGCACGTT 234179 Query 282093 CACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT--CAAATCTGTTTTATA 282150 | || || || | || | || | ||| || |||| || ||| | || | Sbjct 234178 CGCAAGCAGTGCGGAGGCGGCGAAGGGCGCGAGC--ATTGGAGGACAGATCCTTCTTGTG 234121 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 || | |||||| || | ||| | | |||||||| || || ||||||||||| || Sbjct 234120 CTTACGCTTGAATTCGTTGACAAAGTGGTTGACAAGACGGTTGTCGAAATCTTCACCACC 234061 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 ||| | || | || | |||| | | || | || | || || || | | |||||| Sbjct 234060 CAAGTGCGTGTCACCAGCAGTAGATTTGACCTCAAAGATACCCTCCTCGATGGTCAAAAG 234001 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 || |||||| || |||||||||| |||||| ||||| ||||| ||| || Sbjct 234000 AGAAACATCGAAAGTACCACCACCCAAATCAAAGATAAGGACATTGCGTTCGCCCTCAGC 233941 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 || || || | || ||||||| |||||| ||||| || || || || |||| | ||| Sbjct 233940 TTTCTTGTCCAAGCCGTACGCAATAGCAGCGGCAGTAGGCTCGTTGATGATTCGAAGAAC 233881 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||||| || ||||| || ||||| || ||||| || | || || || || || || Sbjct 233880 GTTAAGGCCGGCAATCAGACCAGCATCCTTGGTGGCCTGACGCTGAGAGTCATTGAAGTA 233821 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| || |||| || |||| |||| Sbjct 233820 AGCAGGGACGGTAACGACAGCAT-TGTT 233794 >seq1 Length=3145143 Score = 127 bits (140), Expect = 2e-23 Identities = 245/361 (68%), Gaps = 9/361 (2%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 |||||||||||||| ||||| | ||||| || | |||||| |||| |||| ||| Sbjct 1048163 TCAAAATCTTCACCACCCAAATGAGTATCACCAGCCGTAGCCAAGACTTCGAAAGCACCA 1048104 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | |||| || | || || |||||| ||| |||||||| | ||| | | || Sbjct 1048103 TTATCAATGGAAAGAACAGACACATCAAAGGTACCACCACCAAGATCGTACACAA----- 1048049 Query 282314 TTCATTTC---TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | |||| || ||| | | ||||||||||| || |||| ||| || || || || Sbjct 1048048 -TGATTTGACGTTCGTCACCGGTCTTATCAAGACCGTAGGCAATAGCGGCGGCGGTAGGC 1047990 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| | || | | ||||| | ||| ||||| |||| ||||| || ||||||||| Sbjct 1047989 TCATTGACAACACGAAGGACATTCAAACCGGCAATAGTTCCGGCATCCTTGGTGGCTTGT 1047930 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 ||||| ||| || || || ||||| ||||||| || || || ||| ||| || Sbjct 1047929 CTTTGGTTATCATTGAAGTAGGCAGGGACAGTAACGACAGCGCTGGTGACTGGTTTGCCT 1047870 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | || | || ||| |||||||||| |||| ||| | || | | ||||||| Sbjct 1047869 AGGTACCCCTCGGCAATTTCCTTCATTTTACCCAAAACCATGGCAGACACCTCTTCTGGA 1047810 Query 282551 G 282551 | Sbjct 1047809 G 1047809 Score = 107 bits (118), Expect = 1e-17 Identities = 158/223 (71%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 |||||| ||| |||||||||| ||| | || || |||||| ||| ||||| || | Sbjct 232291 AACATCGAAGGTACCACCACCCAAATCGTAGATGAGAACATTCCGTTCCTTGTC--GGAT 232348 Query 282334 TTTATCAAGACCA-----TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || || ||| || |||| ||||||||||| || || |||||||| | | | Sbjct 232349 TTCCCGGAGCCCAATCCATAGGCAATGGCAGCAGCAGTAGGCTCGTTAATAATACGGAGA 232408 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || || || ||||| || || |||||||| ||||| || | ||| ||||| ||| Sbjct 232409 ACGTTCAGTCCAGCGATGGCACCGGCATCTTTTGTGGCCTGACGTTGGTTGTCGTTGAAA 232468 Query 282449 TATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 || || |||||||||||||| || | | || | |||||||| Sbjct 232469 TAGGCTGGAACAGTAATAACAGCCTTGGAGACCTTTTTTCCAA 232511 >seq3 Length=1865056 Score = 102 bits (112), Expect = 6e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 |||| |||||||||||||| || || ||||||||||||||| ||||| ||| | || Sbjct 703056 TTGAAGGGTAAAGAAGGTCGGCTTCGACAAAATTTGATGGGAAAACGTGTTGATTTTTCA 702997 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTC 432401 || ||||| ||||| || ||| || ||| | |||| | |||||||| ||||| || Sbjct 702996 GCCCGTACGGTTATAACGGGTGACCCCAATTTGTCTCTGGACGAAGTTGGCGTTCCCATC 702937 Query 432402 ATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAT 432455 | ||||||| ||| || || | | ||| |||| || |||||||| || Sbjct 702936 AGTATTGCGCAAACACTGACATATCCGGAAGTTGTTACCCCCTATAATATTAAT 702883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740628485264814