Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9 161 2e-34 seq5 87.8 4e-12 >seq9 Length=1275601 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| |||| ||| | ||| || ||||| ||||| || || || ||||||| Sbjct 1015646 TACCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAG 1015587 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || |||||||| || || |||||||| | ||| || ||||| | Sbjct 1015586 ACAGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTG 1015527 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||||||||||| ||| || || || ||||||||| || || | Sbjct 1015526 GGATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAA 1015467 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || || || || ||||| || || ||||| Sbjct 1015466 CTTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||| | || ||| ||||||||||| |||||||| ||||| || || || Sbjct 1015872 CCTCCACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAGTCTGAA 1015813 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| ||||| || || |||||||| || | ||||| || || || Sbjct 1015812 AGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGA 1015753 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| ||||| |||| || ||||| |||||||| || || ||| ||| Sbjct 1015752 ATACCTTCCTTATCCTGAATTTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTCAACT 1015693 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || |||||||| || | || || ||||| |||||||| Sbjct 1015692 TCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCAT 1015646 >seq5 Length=1732373 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || ||||||||||| | | | | ||| || || || || ||||| || || || Sbjct 840094 TTTTGGATATTATAATCGCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATC 840153 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTC 82741 | || ||||| ||||| || || || ||||| || |||||| ||||| || ||||| || Sbjct 840154 AATCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCCTGAATC-TTGCTCTTGACATTATC 840212 Query 82742 AATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 ||| ||||| | | || || || | ||| || |||||||| || | ||||| || || Sbjct 840213 AATTGTATCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAA 840272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826709393221