Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq9 105 6e-18 >seq6 Length=1499889 Score = 122 bits (134), Expect = 8e-23 Identities = 245/361 (68%), Gaps = 7/361 (2%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| ||||| || || |||||||||||||| || ||||| | | ||| ||||| | ||| Sbjct 77886 GTAATCGCCAACACGCTTCTCAAAAAAGTTGGTCTTGCCGGCAAGCGAGATGTTATCCAT 77945 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473 || ||||| ||||| | | |||| | | |||| | ||| | ||| || | || Sbjct 77946 GAAGTCGAATGGGTTCGTGGAGTTATAATGTTTCTTGTTGCCAAGAGCTACAAGTAACCG 78005 Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533 ||| ||||| ||||| ||||| | |||||| ||| | ||||||||| || | || Sbjct 78006 GTCGGCTACGAACTCGATGTATTGGCACATCAACTTGGAGTTCATGCCAAGGAGAGCACA 78065 Query 120534 CGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC--G 120591 || | || ||| || || || | ||| || ||||| || || ||| || || Sbjct 78066 TGGAAGAGCATCCGTTAAGAATTCTTGCTCGATTTCCACGGCTTCAATGATGATTGCTGC 78125 Query 120592 AGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAG 120651 | || | ||| | || | ||| || | | | | || ||||| |||||| Sbjct 78126 AACAGCTTCTGGGCTGGGA--CGGTGGCGGAGGTGAG---AGAAGAGGAGGCAAGCAAAG 78180 Query 120652 TCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATG 120711 || ||||| || |||||||| || || |||||||||||| || || ||||| |||||| Sbjct 78181 TCAGTGTGAAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAAGTAAGGCCAGGCATG 78240 Query 120712 A 120712 | Sbjct 78241 A 78241 >seq9 Length=1275601 Score = 105 bits (116), Expect = 6e-18 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||||||||| |||||||| || | ||| | | | || || || |||||||| || Sbjct 1015837 CTCTTTCTGGATATTGTAGTCTGAAAGCGTACGGCCA-TCTTCAAGTTGCTTGCCGGCAA 1015779 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTTGAGC 133586 | ||||| ||||| |||||||| || || |||||||| || ||| ||||| ||||| Sbjct 1015778 AGATGAGGCGCTGTTGGTCGGGTGGAATACCTTCCTTATCC-TGAATTTTTGTCTTGACA 1015720 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | |||| |||||| | | || || || | |||| ||| |||||||| || ||||| Sbjct 1015719 TTGTCAATCGTGTCCGAAGATTCAACTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTG 1015660 Query 133647 ACGAAAATCTGCAT 133660 || ||||||||||| Sbjct 1015659 ACAAAAATCTGCAT 1015646 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| ||| | ||| | | | || || ||||| || || ||| Sbjct 1015094 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCAAGCTGTTTACCAGCGA 1015036 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 |||| | || || ||||| ||||||||||| |||||||| |||||| ||| | | Sbjct 1015035 AAATCAAGCGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTCTTAACAT 1014976 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 |||| || ||| ||| ||| || || | ||||| ||| ||||| ||||| || || | Sbjct 1014975 TATCAATGGTATCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 1014916 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 1014915 CGAAGATCTGCAT 1014903 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| |||||||| || || |||||||| || ||| ||||||||| || || || Sbjct 1015615 GGTAGACTCTTTTTGGATGTTGTAATCAGACAGTGTGCGGCCGTCCTCGAGTTGTTTACC 1015556 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || |||||||| || ||||| ||||| || || |||||| || Sbjct 1015555 GGCGAAGATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGAATCTTTGTTTT 1015496 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||| || | | ||| || || | |||| ||||| ||||| | || Sbjct 1015495 GACGTTGTCGATCGTATCAGAAGACTCAACTTCTAATGTGATTGTTTTTCCGGTTAAGGT 1015436 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||||||| ||||| Sbjct 1015435 TTTTACGAAAATTTGCAT 1015418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420564332360