Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 163 3e-35 seq6 147 3e-30 seq12 91.5 2e-13 >seq7 Length=1353353 Score = 163 bits (180), Expect = 3e-35 Identities = 390/590 (66%), Gaps = 11/590 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | |||||||| ||| | ||||||||| || ||||||||| | Sbjct 415596 CCGCAGCATATGATTATGCGCGTTGCCGTTGGTATTCATCATGAGGACATTGATAAAGCG 415655 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||||||| || |||||||||| | || | ||||| | || || || ||| Sbjct 415656 ATTGAGACATACCACCTGATGTCCCAAAAATTTTTTACCCACGCTTCTCCCACACTTTTC 415715 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||||| || ||||| ||| || ||| | ||||||||||| | | |||||||| Sbjct 415716 AATGCGGGAACACCTCAACCACAGATGGCTTCCTGCTTCCTTATTGATATGAAGGAGGAT 415775 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || | || ||||||| || || | | ||||| | || || ||| |||||| Sbjct 415776 AGTATTGAGGGGATCTATGATACACTGAAGACATGTGCTCTGATTTCCAAGACTGCTGGG 415835 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 |||||||| | || | || | | || | | || ||| || |||||| Sbjct 415836 GGTATTGGACTCAACGTTCACCGAATCCGTGCAACTGGCTCCTACATTGCAGGAACAAAT 415895 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || || |||| || ||||| |||||||| || |||||| || || | ||||| Sbjct 415896 GGCTCCTCTAATGGGATCATTCCCATGCTTCGTGTCTTTAACAATACTGCCAGATATGTG 415955 Query 104582 AATCAAGCTGGGCGTCGAAA-------GGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||| ||||| | | | || || | || | |||||||| || ||||| Sbjct 415956 GATCA----GGGCGGCAATAAACGCCCTGGTGCTTTTGCTATTTATCTTGAACCTTGGCA 416011 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 | | || | | ||||| | || | ||| || || ||| | || || | | | Sbjct 416012 CTCTGACGTATTTGAGTTTTTGGACCTCCGTAAAAATCATGGTAAAGAAGAAGTGAGAGC 416071 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| ||| ||| ||||||| ||| || | |||||||| | |||||| ||| Sbjct 416072 CCGAGATCTTTTCCTCGCCCTCTGGACTCCCGACTTGTTCATGAAACGGGTTGAGAAGAA 416131 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 |||| ||||| | || || |||||| || ||||| |||| ||| |||||| Sbjct 416132 TGGCGATTGGACACTATTCTGTCCAAACGAGGCATCTGGACTCGCCGATG 416181 Score = 104 bits (114), Expect = 3e-17 Identities = 596/947 (63%), Gaps = 36/947 (4%) Strand=Plus/Plus Query 104907 CTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 104966 |||||||||||||||| | || | |||||||||||| || |||||||| | ||||| | Sbjct 416335 CTCAAACCGAGACTGGAAATCCTTTCATGCTTTACAAGGATGCCTGTAATCGGAAGAGCA 416394 Query 104967 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTA 105026 | || ||||| | || || | ||||| ||| | ||||| ||||| | || | || Sbjct 416395 ACCAGAAGAACCTTGGAACTATTAGAAGTTCTAATTTATGTACGGAAATTATTGAGTATA 416454 Query 105027 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 105086 | | | ||||| || ||||| || || |||||| | ||| | || | || || | Sbjct 416455 CTGCCCCCGATGAAGTCGCCGTGTGCAATCTAGCATCACTTGCTTTGCCAACATACGTTG 416514 Query 105087 -----ATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 |||| | | | | || || | || ||| | |||| ||| || || ||| Sbjct 416515 ACGCTATCC-GCGGCGAGTAC----GACTTTGGTAAATTGCACGCAGTCACCCAAGTTGT 416569 Query 105142 CACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA 105201 || |||||| | ||||||| || ||||||||| ||||| || Sbjct 416570 GGTGCGCAATTTAAACAAGATCATTGATAACAACCACTACCCCGTTCCCGAAGCTCGAAA 416629 Query 105202 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 ||| | | || || ||||||| ||| || ||||| || ||||| |||| ||| Sbjct 416630 GAGTAACTTCCGTCATCGCCCAATTGCTCTTGGGGTTCAAGGACTCGCTGATGCCTTC-- 416687 Query 105262 TCTTTGTCGCCACG-----CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATA 105316 ||| | | ||| | ||||| ||| | || ||| | | ||| | || Sbjct 416688 ---TTGGCTCTACGTTTGCCTTTTGACTCCTCTCAGGCTAAGCAGCTGAATATTCAGATC 416744 Query 105317 TTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGT 105376 |||||||| || || || ||||| || || | || | || || || || Sbjct 416745 TTTGAGACAATTTACCATGCCGCCCTGACTGCATCCTGCGAACTTTCAAAGACCGAAGGC 416804 Query 105377 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 105436 ||||| ||||| | ||| |||||||| | ||| || || | | || | |||||||| | Sbjct 416805 CCATACGAAACATATGAAGGTTCTCCTGTTTCTCAGGGAATTTTGCAGTATGATATGT-G 416863 Query 105437 GAAGGTGAGACC----AAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT--CAAG 105490 ||| || | ||| | ||| | || |||| |||| ||| || || ||| Sbjct 416864 GAACGTAACACCTTCTGACCTT---TGGGATTGGGTTTCTCTTAAGAAAGAAATAGCAA- 416919 Query 105491 GAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAA 105550 | | ||| | || |||||||| || | || || ||||| || || ||| ||| Sbjct 416920 -AACACGGTGTACGCAACAGTCTTCTTGTTGCCCCTATGCCCACTGCTAGTACCAGCCAA 416978 Query 105551 ATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACC 105610 ||| | || || ||||||||||| || ||||| | || |||||| | || | Sbjct 416979 ATCCTTGGCTTCAACGAATGCTTTGAGCCATACACCTCAAATATCTATTCTCGGCGAGTC 417038 Query 105611 CTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTG 105668 || || ||||| || |||| ||| ||| || || | || || || ||| Sbjct 417039 CTTGCAGGAGAATTCCAAGTTGTTAAC--CCATGGCTTCTGAAAGATCTTGTTGACCTTG 417096 Query 105669 GTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATA 105728 | || ||||| | | ||||| ||| ||| | | ||||| || |||||||||| Sbjct 417097 GACTTTGGTCTGACAACATGAAAAATCGCATCATCGCTGATGGTGGCTCAATTCAAAATA 417156 Query 105729 TTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGA 105788 || |||| || |||| || || | ||| || || |||||||| | Sbjct 417157 TTCCCAATATCCCCGATGACATCAAAGCCCTTTACAAGACTGTATGGGAAATTTCTCAGC 417216 Query 105789 AGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAA 105835 | | | || | ||||| |||||||||||| ||||| |||||| Sbjct 417217 GGACTATTGTTCAGATGGCTGCAGATCGTGGTGCTTTCATCGATCAA 417263 >seq6 Length=1499889 Score = 147 bits (162), Expect = 3e-30 Identities = 348/518 (67%), Gaps = 16/518 (3%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793 |||||| || |||| |||||||| || |||||||| | | | ||| || | | | Sbjct 78396 AGTTCCTTGCATTCGCAAGAAAGCCGACTGGGCTAT----TCGATGGATCCAGGATAGTG 78341 Query 94794 T-TCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 ||| ||||| |||| || | || || || ||||||||||||||||||| || Sbjct 78340 AATCCACATTTGCACAGCGTCTTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTG 78281 Query 94850 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 |||| || ||| |||||| ||| | |||||||| ||||||||||| || || ||| Sbjct 78280 GTTCTTT-TGCTTCTATTTTCTGGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTC 78222 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTC 94968 ||||||||||| ||||||||||||||||| || ||| || ||||| || ||| Sbjct 78221 TCCAACGAGCTGATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTC 78162 Query 94969 AAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTT 95028 | || || | | || || || | || | | |||||||| Sbjct 78161 TCTCACCTCCGCCACCGTCCCAGCCCAGAAGCTGTTGCAGCAATCATCATTGAAGCCGTG 78102 Query 95029 GAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 95088 || || ||| ||| |||| || |||||| |||||||| |||||| | || ||||| || Sbjct 78101 GAAATCGAGCAAGAATTCTTAACGGATGCTCTTCCATGTGCTCTCCTTGGCATGAACTCC 78042 Query 95089 GAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATT-GTTGAAGCAGATCGGGGT 95147 | |||| |||| || |||| ||| | || | || ||| ||| || || Sbjct 78041 AAGTTGATGTGCCAATACATCGAGTTCGTAGCCGACCGGTTACTTGTAGC---TCTTGGC 77985 Query 95148 GCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGAC 95205 | || || ||||||| ||| ||||| ||||||||||| ||||| || | | Sbjct 77984 AACAAGAAACATTATAACTCCACGAACCCATTCGACTTCATGGATAACATCTCGCTTGCC 77925 Query 95206 GGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 || ||||| ||||| || || ||| | ||||| || || Sbjct 77924 GGCAAGACCAACTTTTTTGAGAAGCGTGTTGGCGATTA 77887 >seq12 Length=982140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||| || | |||||| || || |||||||||| ||||| || |||| || ||| Sbjct 522009 CTTGCCAATGGCATCGATTTCGTCAATGAAGATTATGCAAGGAGTGTTTTTTCGCGCGTT 521950 Query 9754 TTCAAAGAGATCCCGTACACGCT-TGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | | || ||||| || ||||| |||| || |||||||||||||| ||||| || | || Sbjct 521949 TGCGAAAAGATCACGAACACGAGATGGC-CCAACACCAACAAACATTTCCACGAACTCTG 521891 Query 9813 --CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | || || | || || || || ||| || || || |||| || || || Sbjct 521890 AACCGCTGACGCT--GAAAAATGGAACGCCAGACTCGCCGGCTGTGGCCTTCGCTAGTAG 521833 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| |||||||| || | ||||| ||||| || |||||||| ||||| Sbjct 521832 TGTCTTACCGGTACCTGGTGGGCCAGAGAGGATAGCACCGCGGGGAATCTTAGCGCC 521776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260515660360