Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 179 4e-40 seq5 147 2e-30 seq6 120 3e-22 seq2 107 2e-18 >seq9 Length=1275601 Score = 179 bits (198), Expect = 4e-40 Identities = 170/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| ||||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1015200 TTGTCAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTCGAGTCTTCTGATACCATCG 1015259 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 ||| |||| | || || |||||||| || || || || || |||||||| || | | Sbjct 1015260 ACAATGTGAAAACCAAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAGCAACGATTGA 1015319 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || |||||||| ||||||||||||| ||| ||||| | || || || | || |||| Sbjct 1015320 TCTTCGCTGGTAAACAACTCGAGGATGGTCGCACCCTCTCGGATTACAACATTCAGAAGG 1015379 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || ||| | |||||||||||||| Sbjct 1015380 AGTCCACTCTCCACCTTGTCCTTCGTCTTCGCGGTGG 1015416 Score = 152 bits (168), Expect = 6e-32 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || |||||||| || || |||||||| ||||| Sbjct 1014900 ATTATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCC 1014959 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| ||||| ||| | ||| |||| || || ||||||||||| || ||||||||| Sbjct 1014960 AGCGATACCATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGCATCCCTCCAGAC 1015019 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || || | ||||| |||||||| || || || |||| || ||||| | ||||| Sbjct 1015020 CAACAACGCTTGATTTTCGCTGGTAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTAC 1015079 Query 27583 AATGTCCAAAAGGA 27596 || |||| ||||| Sbjct 1015080 AACATCCAGAAGGA 1015093 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || |||||||||||||| || || | || ||||| || Sbjct 1015646 ATGCAGATTTTTGTCAAAACACTTACCGGCAAGACCATCACATTAGAAGTTGAATCTTCG 1015705 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | ||||||||||| ||||| || ||||| || ||||| Sbjct 1015706 GACACGATTGACAATGTCAAGACAAAAATTCAGGATAAGGAAGGTATTCCACCCGACCAA 1015765 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || |||||||| || |||| ||||| || ||||||| ||| Sbjct 1015766 CAGCGCCTCATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACGCTTTCAGACTACAAT 1015825 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| || || |||||| || Sbjct 1015826 ATCCAGAAAGAGAGCACTCTGCA 1015848 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | ||||| || || || || | || |||||||| | Sbjct 1015418 ATGCAAATTTTCGTAAAAACCTTAACCGGAAAAACAATCACATTAGAAGTTGAGTCTTCT 1015477 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | || | || ||||| || || || || || || ||||||||| Sbjct 1015478 GATACGATCGACAACGTCAAAACAAAGATTCAAGATAAAGAAGGTATCCCACCAGACCAG 1015537 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || ||||| || || ||||| ||||||||||| | || || || | || || || Sbjct 1015538 CAACGCCTAATCTTCGCCGGTAAACAACTCGAGGACGGCCGCACACTGTCTGATTACAAC 1015597 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || || || || || ||||| | |||||||| Sbjct 1015598 ATCCAAAAAGAGTCTACCCTCCACCTTGTTTTGCGGTTGCGCGGTGG 1015644 >seq5 Length=1732373 Score = 147 bits (162), Expect = 2e-30 Identities = 144/183 (79%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || ||||||||||| || ||||||||||| ||||| | |||| || Sbjct 840273 CTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGCGATACAAT 840214 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| || ||||||||||||||||| ||||| |||||||| ||||| | Sbjct 840213 TGATAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCGCCAGACCAACAGCGATT 840154 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 ||||| || || ||||| || ||||||| ||| || | ||| || |||||| |||||| Sbjct 840153 GATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGAGC-GATTATAATATCCAAA 840095 Query 27593 AGG 27595 ||| Sbjct 840094 AGG 840092 >seq6 Length=1499889 Score = 120 bits (132), Expect = 3e-22 Identities = 340/512 (66%), Gaps = 28/512 (5%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || || || || ||||| || || ||||| | || ||| || | |||| |||||| Sbjct 78380 AAGAAAGCCGACTGGGCTATTCGATGGATCCAGGATAGTGAATCCACATTTGCACAGCGT 78321 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || ||||| ||| ||| || || || ||||| ||| || || |||||||||| Sbjct 78320 CTTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTTGCTTCTATTTTC 78261 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| |||| ||||| || || ||||| || || | || || ||||||||||||||||| Sbjct 78260 TGGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTCTCCAACGAGCTGATCTCTCGT 78201 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTAC--CCTGTTCAGCCACCTCAAGGACAAAC 64897 |||||||| || ||| || ||||| || | ||| ||| |||||| | | || Sbjct 78200 GACGAGGGTCTTCACACTGACTTTGC--TTGCCTCCTCTTCTCTCACCTC--CGCC--AC 78147 Query 64898 CATCACATGGGACTATAA-TTGATATAGTAA-AATC-----GGCTGTAGAAATTGAAAAG 64950 | || || | | | || || | || || ||| || || ||||| || | Sbjct 78146 CGTCCCA---GCCCAGAAGCTGTTGCAGCAATCATCATTGAAGCCGTGGAAATCGAGCAA 78090 Query 64951 GAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAA 65010 |||||| | || | || ||||| ||| |||| | |||||| | || | |||| Sbjct 78089 GAATTCTTAACGGATGCTCTTCCATGTGCTCTCCTTGGCATGAACTCCAAGTTGATGTGC 78030 Query 65011 CAGTATATCGAATTTGTAGCAGATCGCCTGCTT---ACTCAGTTTGGTATTAAGCCCTAC 65067 || || ||||| || ||||| || || | ||| ||| |||| | ||| | Sbjct 78029 CAATACATCGAGTTCGTAGCCGACCGGTTACTTGTAGCTC---TTGGCAACAAGAAACAT 77973 Query 65068 TGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAAC 65127 | || || | || ||||| |||| ||||| | ||| || | || ||||| ||| Sbjct 77972 TATAACTCCACGAACCCATTCGACTTCATGGATAACATCTCGCTTGCCGGCAAGACCAAC 77913 Query 65128 TTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 |||||||| ||| | || || |||||| |||| Sbjct 77912 TTTTTTGAGAAGCGTGTTGGCGATTAC-CAAA 77882 >seq2 Length=1931404 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| ||||| || || || || || ||| Sbjct 802102 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAACAGCTGGAG 802161 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| ||||| ||||| || ||| | Sbjct 802162 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTC 802221 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 802222 CGCCTCCGTGGTGG 802235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310121973680