Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 >seq9 Length=1275601 Score = 107 bits (118), Expect = 1e-18 Identities = 168/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| ||||| || || || ||| | || || ||| | Sbjct 1015646 ATGCAGATTTTTGTCAAAACACTTACCGGCAAGACCATCACATTAGAAGTTGAATCTTCG 1015705 Query 27850 GAC--GATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 ||| ||| ||||| ||||| ||||||| | || || || |||||| |||| || Sbjct 1015706 GACACGATTGACAAT--GTCAAGACAAAAATTCAG--GATAAGGAAGGTATTCCACCCGA 1015761 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATT 27964 || || || | || |||||||| || ||| | || || | || | |||| || || | Sbjct 1015762 CCAACAGCGCCTCATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACGCTT-TCAGACT 1015820 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| |||||||||||| |||| ||||||||| | |||||||| || Sbjct 1015821 ACAATATCCAGAAAGAGAGCACTCTGCACTTGGTTTTGAGATTGCGTGGAGG 1015872 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| || ||| | || || || | Sbjct 1015418 ATGCAAATTTTCGTAAAAACCTTAACCGGAAAAACAATCACATTAGAAGTTGAGTCTTCT 1015477 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| |||| |||||| ||| || || ||||||||| | || || | Sbjct 1015478 GATACGATCGACAAC--GTCAAAACAAAGATTCAAGATAAAGAAGGTATCCCACCAGACC 1015535 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| |||| || ||||| |||||| | || |||| |||| |||| ||||||| Sbjct 1015536 AGCAACGCCTAATCTTCGCCGGTAAACAACTCGAGGACGGCCGCACACTGTCTGATTACA 1015595 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| || | || | |||||||| ||||| || || Sbjct 1015596 ACATCCAAAAAGAGTCTACCCTCCACCTTGTTTTGCGGTTGCGCGGTGG 1015644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862230854153