Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 134 3e-26 seq5 107 5e-18 seq22 84.2 5e-11 >seq9 Length=1275601 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||||||||| || || |||||||||| |||||||| | || || | || || || Sbjct 1015626 ACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGACAGTGTGCGGCCGTCCTCG 1015567 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || || || || |||||||| || ||||| ||||| || || |||||||| || ||||| Sbjct 1015566 AGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGA 1015507 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| || || ||||| || || || | || || ||||| ||||| || || Sbjct 1015506 ATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAACTTCTAATGTGATTGTTTTT 1015447 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||||| ||| | |||||| Sbjct 1015446 CCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||||| || | ||| |||||| ||||| |||| |||||| || | | || Sbjct 1015867 ACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAGTCTGAAAGCGT 1015808 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || || ||||| || || ||||||||||| |||||||| Sbjct 1015807 ACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGAATACC 1015748 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || || ||| ||| ||| || || ||||| || | ||| || ||||| Sbjct 1015747 TTCCTTATCCTGAATTTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTCAACTTCTAA 1015688 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || | ||||| Sbjct 1015687 TGTGATGGTCTTGCCGGTAAGTGTTTT 1015661 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||||||||||||||||| || || || | |||||||| | | || Sbjct 1015410 CGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTG 1015351 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || || || ||||||||||| | |||||| |||||||| || || ||| Sbjct 1015350 CGACCATCCTCGAGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGGATGCCT 1015291 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| |||||||| |||||| |||||||| || || | || || || | Sbjct 1015290 TCTTTGTCCTGGATCTTGGTTTTCACATTGTCGATGGTATCAGAAGACTCGACCTCAAGG 1015231 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || |||||||| || | ||| || Sbjct 1015230 GTAATAGTCTTGCCAGTAAGAGTCTT 1015205 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || |||| ||||| |||| | || | |||||| Sbjct 1015114 AGGACCAAGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1015055 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || |||||||| || | ||||||||||| || || || || ||||||||| Sbjct 1015054 TCAAGCTGTTTACCAGCGAAAATCAAGCGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCT 1014995 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || ||||| || || || || || | ||||| ||| Sbjct 1014994 TGGATCTTAGTCTTAACATTATCAATGGTATCGCTGGACTCGACCTCAAGGGTGATGGTC 1014935 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 1014934 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 1014903 >seq5 Length=1732373 Score = 107 bits (118), Expect = 5e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||| |||||| |||||| | ||||| || |||||||| || ||||| || Sbjct 840094 TTTTGGATATTATAATCGCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATC 840153 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| |||||||| ||||||||||| |||||||| || ||||| ||| ||| || Sbjct 840154 AATCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTATCA 840213 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || | || || || | ||||| |||||||| || Sbjct 840214 ATTGTATCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 840257 >seq22 Length=47680 Score = 84.2 bits (92), Expect = 5e-11 Identities = 140/199 (70%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| |||| | ||||||||| | ||||||| || ||| | | Sbjct 18805 AACATTATATTTAATGTTTGCTTTATTTTCTGGTTTATTAGGTACAGCTTTCTCTGTACT 18864 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTT 7558 || || | ||||| |||| || ||| ||| |||||| | |||| ||||| | Sbjct 18865 AATCAGACTTGAATTGTCTGCACCTGGTGTACAATATATTG-CAGATAAT---CAACTAT 18920 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||||||||| || ||||| | | |||||||| ||| | |||||||| | | Sbjct 18921 ATAATAGTATTATTACAGCACATGCTATAATGATGATTTTTTTTATGGTTATGCCTGCTT 18980 Query 7619 TGATAGGCGGTTTCGGAAA 7637 | || || |||||||| || Sbjct 18981 TAATTGGAGGTTTCGGTAA 18999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530604107066