Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 172 1e-37 seq5 104 6e-17 >seq9 Length=1275601 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| ||||| | || || || || || Sbjct 1015421 CAAATTTTCGTAAAAACCTTAACCGGAAAAACAATCACATTAGAAGTTGAGTCTTCTGAT 1015480 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| ||||||||| || |||||||| ||||| || ||||||||| Sbjct 1015481 ACGATCGACAACGTCAAAACAAAGATTCAAGATAAAGAAGGTATCCCACCAGACCAGCAA 1015540 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| ||||| ||||| || || | || || | ||||| ||| || Sbjct 1015541 CGCCTAATCTTCGCCGGTAAACAACTCGAGGACGGCCGCACACTGTCTGATTACAACATC 1015600 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||| || || || || ||||||||| Sbjct 1015601 CAAAAAGAGTCTACCCTCCACCTTGTTTTG 1015630 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||||| || || || || || ||||| ||||| || || || |||||||| Sbjct 1015202 GTCAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 1015261 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || ||| ||||| |||||||||||||| ||||| || |||||||||||| | ||| Sbjct 1015262 AATGTGAAAACCAAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAGCAACGATTGATC 1015321 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || ||||| ||||| ||||| | || || | ||||| ||| | || || || Sbjct 1015322 TTCGCTGGTAAACAACTCGAGGATGGTCGCACCCTCTCGGATTACAACATTCAGAAGGAG 1015381 Query 178113 TCAACACTGCATCTTGT 178129 || || || || ||||| Sbjct 1015382 TCCACTCTCCACCTTGT 1015398 >seq5 Length=1732373 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986 ||||| || || ||||| || || || ||||| || ||||| || ||| || || Sbjct 840272 TTCGTTAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC---GATACA 840216 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || ||||| |||||||||||||| || || || || || ||||| || ||| Sbjct 840215 ATTGATAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCGCCAGACCAACAGCGA 840156 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | || ||||||||||| ||||| || ||||| | ||| | ||||||||| ||||| Sbjct 840155 TTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGAGCGATTATAATATCCAA 840096 Query 178107 AA 178108 || Sbjct 840095 AA 840094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730598510566