Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiognomonia_20clavigignenti- juglandacearum_20[genbank_20GCA_5F000220195.1_202011-07-07] 28,868 sequences; 15,906,360 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5788 145 9e-30 >seq5788 Length=545 Score = 145 bits (160), Expect = 9e-30 Identities = 263/384 (68%), Gaps = 8/384 (2%) Strand=Plus/Plus Query 115660 TGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG 115719 ||||| || ||||||||| || || || || ||||| | | | | | || | Sbjct 41 TGGGACTGGTCGATGAAGGCGCCACGGTCGGCAGCCATCTGCACGATAGTCCTCTGAGAG 100 Query 115720 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 115779 |||||||| || || |||| || ||| || ||||| ||||| ||| || ||| Sbjct 101 ATTTCCCAGACTGTCTTGTACAGAGCCTTGATGTCATCAGGGATGCTGCGGATGTTCTGG 160 Query 115780 ATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTC 115839 || |||||| | | || ||| | | ||||| |||| ||||| |||||| || Sbjct 161 ATGGAGCCATCCTCGGCGATGATGCGGTTCTTCAAGTCCTCAGACCACAGACCACACTGG 220 Query 115840 TTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 115895 || |||| || | | | | |||||||| |||||||| ||||| || Sbjct 221 ACCAGGTCCTTCAGCAACCAAGGG----TTGACAACCTGGAACTCACCAGCGAGCACACG 276 Query 115896 TCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 115955 || | | |||||||||| ||||| ||||| |||||||| ||||| |||||||| || | Sbjct 277 TCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGA 336 Query 115956 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAAT 116015 || ||||| ||||||||||| ||||| || | ||||||||||| || | || | || Sbjct 337 GGTCGAGGCAGTGGGCATGGGCGCCATCAGCAAGCTGTTGCGGATGCCGTGCTCCTTGAT 396 Query 116016 GCGTTCCTTGAGGGCGTCCCAGTC 116039 |||||||||| |||||||| Sbjct 397 CTTGGCCTTGAGGGCATCCCAGTC 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613285815926880