Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiognomonia_20clavigignenti- juglandacearum_20[genbank_20GCA_5F000220195.1_202011-07-07] 28,868 sequences; 15,906,360 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4921 167 3e-35 seq15420 89.7 6e-12 seq2979 89.7 6e-12 >seq4921 Length=358 Score = 167 bits (184), Expect = 3e-35 Identities = 221/305 (72%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 1573947 CTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGC 1574006 ||| | |||| ||| | | || |||||||||||||||||||||||||||||||||||| Sbjct 349 CTCCTCGGCGATGCCTACAAGGAAGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGC 290 Query 1574007 GTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCC 1574066 |||| ||||||||||| ||||||| | ||| |||| | || ||||| ||| Sbjct 289 ATCGATGTCGTGCGCAACCGCATCAAGGGCTTCGCGCAGAAGAAGGTCACGCTGCCTCCC 230 Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 || ||||||||| | |||| | |||||||| ||| || | ||||| | || |||||| Sbjct 229 GGCCGCCACAAGCTCGTCATTTTGGACGAGGCGGACAGCATGACGTCCGGCGCGCAGCAG 170 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 || ||||| ||| ||||| | | | ||| |||||||| || || | ||||||||| Sbjct 169 GCGCTGCGCCGCACGATGGAGATTTATAGCAATACGACGCGGTTCGCGTTTGCGTGCAAC 110 Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTGC 1574244 | | | |||||||| | || | |||||| || || || ||||| | || || Sbjct 109 CAGAGCAATAAGATCATCGAGCCGCTGC--AGTCGCGGTGTGCGATCCTGCGGTATGCGC 52 Query 1574245 GCCTG 1574249 | ||| Sbjct 51 GGCTG 47 >seq15420 Length=311 Score = 89.7 bits (98), Expect = 6e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| ||||||||||| | || || ||||| Sbjct 185 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGATACCATTGGA 244 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCG 1630163 | |||||||||||| || | |||| ||| | ||| || Sbjct 245 CGTGCCGTTGGTGCCAGCAATATAGGAGCCAGTGGCACG 283 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1628479 AAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCG 1628538 || |||||||| || || ||| ||||||||||||||||| |||||||| | ||| Sbjct 63 AACAGGTCGCGGGCACGAGCCTCGTCCTTGCCGTGGTTCTTCCGCAGGTCGAGGAACTCG 122 Query 1628539 ACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCG 1628598 | | ||| |||||||| |||||||||||| ||| || ||||| |||||| ||| Sbjct 123 AAGACGTCAGCGTGCCATGGCTCCAGGTAGATGGCGAAAGCGCCGGGACGCTTGTTGCCA 182 Query 1628599 CC 1628600 || Sbjct 183 CC 184 >seq2979 Length=1073 Score = 89.7 bits (98), Expect = 6e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1254380 GGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGC 1254439 ||||||||||||||| | ||| ||| |||||| || || || || ||| Sbjct 837 GGTCTGGATCTCGCGGGAAGAGATGGTGGACTTCTTGTTGTAGGCAGCAAGCTTGCTGGC 778 Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||||||| | | || |||| ||||||||||| |||||||| | || ||||| | Sbjct 777 CTCGGTGGCAACACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGGACATGGCGCG 718 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 717 GTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104770156731156