Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiognomonia_20clavigignenti- juglandacearum_20[genbank_20GCA_5F000220195.1_202011-07-07] 28,868 sequences; 15,906,360 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4921 149 1e-29 seq2979 96.9 5e-14 seq15420 89.7 8e-12 seq5788 87.8 3e-11 >seq4921 Length=358 Score = 149 bits (164), Expect = 1e-29 Identities = 231/328 (70%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 2019075 GCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGAC 2019134 ||||| |||| | |||| ||| | | || ||||||||||||||||| ||||| ||| Sbjct 358 GCGCGGCAGCTCCTCGGCGATGCCTACAAGGAAGCCGTGCTCGAACTCAACGCGTCGGAC 299 Query 2019135 GAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAA--T 2019190 ||||||||| | || |||||||| | ||||||| | || ||| | ||||| | Sbjct 298 GAGCGCGGCATCGATGTCGTGCGCAACCGCATCAAGGGCTTCGCGC----AGAAGAAGGT 243 Query 2019191 CGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTC 2019250 | ||||| ||||||||||||||| | |||| | || ||||| ||| || | ||||| Sbjct 242 CACGCTGCCTCCCGGCCGCCACAAGCTCGTCATTTTGGACGAGGCGGACAGCATGACGTC 183 Query 2019251 GGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGC 2019310 | || |||||||| || || || ||||| | || | ||| ||||||||||| || Sbjct 182 CGGCGCGCAGCAGGCGCTGCGCCGCACGATGGAGATTTATAGCAATACGACGCGGTTCGC 123 Query 2019311 GCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTT 2019370 | | || |||||| | | | ||||||| | || ||| || || || ||| | Sbjct 122 GTTTGCGTGCAACCAGAGCAATAAGATCATCGAGCCGCTGCAGTCGCGGTGTGCGATCCT 63 Query 2019371 GCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 ||| | |||||| || || || || ||| Sbjct 62 GCGGTATGCGCGGCTGACGGATGCGCAG 35 >seq2979 Length=1073 Score = 96.9 bits (106), Expect = 5e-14 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG-GCCGG 1485604 ||||||||||||||||| ||| ||| |||||| || || || || || || Sbjct 837 GGTCTGGATCTCGCGGGAAGAGATGGTGGACTTCTTGTT-GTAGGCAGCAAGCTTGCTGG 779 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| | | || |||| ||||||||||| |||||||| | ||| ||||| | Sbjct 778 CCTCGGTGGCAACACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGGACATGGCGC 719 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 718 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 679 >seq15420 Length=311 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 2071891 AAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCG 2071950 || || ||||| || || ||| ||||||||||||||||| ||||||||| | ||| Sbjct 63 AACAGGTCGCGGGCACGAGCCTCGTCCTTGCCGTGGTTCTTCCGCAGGTCGAGGAACTCG 122 Query 2071951 ACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCG 2072010 | || ||| |||||||| |||||||||||| ||| || ||||| |||||| ||| Sbjct 123 AAGACGTCAGCGTGCCATGGCTCCAGGTAGATGGCGAAAGCGCCGGGACGCTTGTTGCCA 182 Query 2072011 CC 2072012 || Sbjct 183 CC 184 >seq5788 Length=545 Score = 87.8 bits (96), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 ||||||| || || || || | |||||| || ||| |||||||||| ||| Sbjct 243 GGTTGACAACCTGGAACTCACCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTAAG 302 Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722 |||| | |||| ||||||||| ||||||||| |||| ||| ||||||||| |||||| Sbjct 303 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTCGAGGCAGTGGGCATGGGCGCCA 362 Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782 |||| |||||| | ||||| || | | ||| ||||| |||||||||| Sbjct 363 TCAGCAAGCTGTTGCGGATGCCGTGCTCCTTGATCTTGGCCTTGAGGGCATCCCAGTCCC 422 Query 2069783 A 2069783 | Sbjct 423 A 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913175579173052