Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiognomonia_20clavigignenti- juglandacearum_20[genbank_20GCA_5F000220195.1_202011-07-07] 28,868 sequences; 15,906,360 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15420 159 4e-34 seq10147 105 7e-18 seq5788 100 3e-16 >seq15420 Length=311 Score = 159 bits (176), Expect = 4e-34 Identities = 193/260 (74%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || |||||| || |||| ||| | || |||||||| |||||||||||||| || Sbjct 259 GGCACCAACGGCACGTCCAATGGTATCATTCCCATGCTCCGTGTCTTCAACAACACTGCT 200 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || |||||| |||||||||| ||||| || | |||||||||||||| ||||| Sbjct 199 CGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGCGCTTTCGCCATCTACCTGGAGCCA 140 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| ||| | | ||||| ||||| ||||| ||| || || | || ||| Sbjct 139 TGGCACGCTGACGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGCAAGGACGAGGCT 80 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 || ||| |||||| || | ||||| |||||||| || ||||||||| | |||||| Sbjct 79 CGTGCCCGCGACCTG-TTCCTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTGGAG 21 Query 53711 AAGGACGAGGAGTGGTACCT 53730 ||| ||| |||||| |||| Sbjct 20 AAGAACGGCGAGTGG-ACCT 2 >seq10147 Length=556 Score = 105 bits (116), Expect = 7e-18 Identities = 152/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC-AATCGTGCCCTGCAGACTCGCTTC 152171 ||||| | ||||| || |||| |||||| || ||| || ||||||| | ||| Sbjct 551 TTGTTCGATCCCACAAAGGTCTGGGCCAAAACCAATAATGGTCTGCTGCAGAGATGTTTC 492 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || |||||||| | || |||||| ||||| | |||||||| |||| Sbjct 491 ACCGTGGTGGTAGGCAGTCTGCTCAGAGACGTATCCAGCCAATTCGACCACCTTCTTGTC 432 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | | |||| ||||| |||||| | | ||||| ||||| || ||||| || Sbjct 431 CTTGACGATGTTCCGCTTGAAGCAGGCGAAGACGACCTTTCGCTGTCCAGGCTTCAAGCC 372 Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || || ||| ||||| |||||| || |||| Sbjct 371 ATCGACAACGGAGGGAATGGAACGCATGTTGTC 339 >seq5788 Length=545 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||| | |||| ||||||| ||||| || || ||||| | |||||| || Sbjct 384 GGCATCCGCAACAGCTTGCTGATGGCGCCCATGCCCACTGCCTCGACCTCGCAGATCTTG 325 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| |||||||| ||||| |||||||||||| ||| || || || Sbjct 324 GGCAACAACGAGTGCTTCGAGCCTTACACCTCCAACATCTACCAGCGACGTGTGCTCGCT 265 Query 55598 GGTGAGTT 55605 |||||||| Sbjct 264 GGTGAGTT 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547018537106400