Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiognomonia_20clavigignenti- juglandacearum_20[genbank_20GCA_5F000220195.1_202011-07-07] 28,868 sequences; 15,906,360 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq24886 102 7e-17 >seq24886 Length=347 Score = 102 bits (112), Expect = 7e-17 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || ||| | || ||||| || || ||||||||||| ||||| || Sbjct 175 CTGCCAGCTGTACCAGCGGTCGTGCGATATGGGCTTGGGCGTGCCGTTCAATATTGCCAG 234 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGT-CGTGGGGTTGGTTCCTGGGGAGC-TG 34753 ||||| |||| ||| |||||||||| ||||| ||| | ||| ||| ||| ||| || Sbjct 235 CTACGCGTTGCTGACGCACATGATCGCGCATGTGTGTGAGCTTG--TCCCGGGCAGCTTG 292 Query 34754 GTGCATACGTTGGGGGATGCGCAT 34777 ||| |||||| ||||||||| Sbjct 293 ACCCATGTGTTGGGTGATGCGCAT 316 Score = 102 bits (112), Expect = 7e-17 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 6568 ATGCGCATCCCCCAACGTATGCACCA-GCTCCCCAGGAACCAACCCCACG-ACATGAGCG 6625 ||||||||| |||||| ||| || ||| ||| ||| ||| | ||| ||||| ||| Sbjct 316 ATGCGCATCACCCAACACATGGGTCAAGCTGCCCGGGA--CAAGCTCACACACATGCGCG 259 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 ||||||| ||| |||| ||||| || ||||| ||||||||||| || || ||||| || Sbjct 258 ATCATGTGCGTCAGCAACGCGTAGCTGGCAATATTGAACGGCACGCCCAAGCCCATATCG 199 Query 6686 CCCGATCGTTGATAGAGCTGGCAG 6709 | ||| || || || ||||||||| Sbjct 198 CACGACCGCTGGTACAGCTGGCAG 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448100644512960