Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq537 136 4e-27 seq639 105 7e-18 seq1192 104 2e-17 seq725 100 3e-16 >seq537 Length=102077 Score = 136 bits (150), Expect = 4e-27 Identities = 203/285 (71%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || ||||| ||||| ||||||| || || || || || Sbjct 34372 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 34431 Query 116696 TCCAAGGACACGAGCGACTGGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || |||||| | | ||||| || ||||||| | |||||| Sbjct 34432 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 34491 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||| || |||||||| || || || ||||| ||||| || ||||||||| Sbjct 34492 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCGT 34551 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || || ||||| | ||||| || ||||||||||| || |||||| || Sbjct 34552 TTCAGCGGA-GAAGTCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGAT 34610 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||| ||| | ||||| |||| || || |||||||| ||||| Sbjct 34611 GGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTA 34655 Score = 129 bits (142), Expect = 6e-25 Identities = 303/451 (67%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 ||||| || ||||| | |||||||||| | || |||| | |||| | |||| || Sbjct 34778 AAGGCTGATTGGGCTATCCGCTGGATCGAAGACAAAGAGTCTACCTTTGCACAGCGTCTC 34837 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || ||||| || || ||||| || ||||||| || || || | || || ||| Sbjct 34838 GTCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGG 34897 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || ||||| || ||||| ||||| ||||| || || ||| ||||| ||||| | || Sbjct 34898 CTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGAT 34957 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 |||||| | || ||||| ||||| | || ||| || || || || || ||| Sbjct 34958 GAGGGTTTACACACTGACTTCGCCTGCCTTCTCTTCTCTCACCTGCGCCACCGCCCCAGC 35017 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | | || | | ||| |||| || || ||||||||||||||| |||||||| Sbjct 35018 CCAGAGGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCACA 35077 Query 117284 GAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCG 117341 || || || || |||| || || ||| | || || || | |||| |||||||||| Sbjct 35078 GATGCTCT-CCCATGCGCACTTCTCGGAATGAA-CGCCAAGCTCATGTGCCAATACATCG 35135 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGC 117398 |||| || || || | || || | | ||| ||| ||| | ||||||| | Sbjct 35136 AGTTTGTTGCTGATCGACTCCTCGTTGCTCTG---GGCAATAAGAAAGTCTACAACTCTA 35192 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||||| | || || ||| || |||||| Sbjct 35193 CCAACCCATTCGATTTCATGGACAACATCTC 35223 >seq639 Length=25736 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| ||||| ||| ||| | | | Sbjct 21993 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATC 21934 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | ||| ||||| | ||||| ||||| ||||| | || ||||| ||| | Sbjct 21933 GACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATTG 21874 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| || || || | || || || ||||||||| Sbjct 21873 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAAG 21814 Query 40879 G 40879 | Sbjct 21813 G 21813 >seq1192 Length=144406 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| | ||||||||||| || |||| ||| || |||||||| || Sbjct 8873 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 8814 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||||||||||| ||||||||| | || || || || || || Sbjct 8813 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 8754 Query 40903 CG 40904 || Sbjct 8753 CG 8752 >seq725 Length=19491 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || |||||||| || || | || || || | || Sbjct 8626 ATGCAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAGAGCTCC 8685 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | || ||||| | || || || || ||||| |||| ||| Sbjct 8686 GATACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 8745 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || |||||||| || || | || || || |||||||| Sbjct 8746 CAACGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACAAT 8805 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| || ||||| || || | ||| |||| ||| Sbjct 8806 ATCCAGAAGGAGAGCACTCTCCATCTGGTCCTGAGATTGCGGGGTGGC 8853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210389751680