Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201
6-08-25] 1,368 sequences; 29,399,910 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq537 136 4e-27
seq639 105 7e-18
seq1192 104 2e-17
seq725 100 3e-16
>seq537
Length=102077
Score = 136 bits (150), Expect = 4e-27
Identities = 203/285 (71%), Gaps = 5/285 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| || || ||||| ||||| ||||||| || || || || ||
Sbjct 34372 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 34431
Query 116696 TCCAAGGACACGAGCGACTGGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || |||||| | | ||||| || ||||||| | ||||||
Sbjct 34432 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 34491
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| |||| || |||||||| || || || ||||| ||||| || |||||||||
Sbjct 34492 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCGT 34551
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || | || || ||||| | ||||| || ||||||||||| || |||||| ||
Sbjct 34552 TTCAGCGGA-GAAGTCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGAT 34610
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
||| ||| | ||||| |||| || || |||||||| |||||
Sbjct 34611 GGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTA 34655
Score = 129 bits (142), Expect = 6e-25
Identities = 303/451 (67%), Gaps = 10/451 (2%)
Strand=Plus/Plus
Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043
||||| || ||||| | |||||||||| | || |||| | |||| | |||| ||
Sbjct 34778 AAGGCTGATTGGGCTATCCGCTGGATCGAAGACAAAGAGTCTACCTTTGCACAGCGTCTC 34837
Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103
|| ||||| || || ||||| || ||||||| || || || | || || |||
Sbjct 34838 GTCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGG 34897
Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163
|| ||||| || ||||| ||||| ||||| || || ||| ||||| ||||| | ||
Sbjct 34898 CTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGAT 34957
Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223
|||||| | || ||||| ||||| | || ||| || || || || || |||
Sbjct 34958 GAGGGTTTACACACTGACTTCGCCTGCCTTCTCTTCTCTCACCTGCGCCACCGCCCCAGC 35017
Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283
| | | || | | ||| |||| || || ||||||||||||||| ||||||||
Sbjct 35018 CCAGAGGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCACA 35077
Query 117284 GAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCG 117341
|| || || || |||| || || ||| | || || || | |||| ||||||||||
Sbjct 35078 GATGCTCT-CCCATGCGCACTTCTCGGAATGAA-CGCCAAGCTCATGTGCCAATACATCG 35135
Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGC 117398
|||| || || || | || || | | ||| ||| ||| | ||||||| |
Sbjct 35136 AGTTTGTTGCTGATCGACTCCTCGTTGCTCTG---GGCAATAAGAAAGTCTACAACTCTA 35192
Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTC 117429
||||||| | || || ||| || ||||||
Sbjct 35193 CCAACCCATTCGATTTCATGGACAACATCTC 35223
>seq639
Length=25736
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| |||| ||||| ||| ||| | | |
Sbjct 21993 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATC 21934
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | | ||| ||||| | ||||| ||||| ||||| | || ||||| ||| |
Sbjct 21933 GACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATTG 21874
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| || || || | || || || |||||||||
Sbjct 21873 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAAG 21814
Query 40879 G 40879
|
Sbjct 21813 G 21813
>seq1192
Length=144406
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| ||||| | ||||||||||| || |||| ||| || |||||||| ||
Sbjct 8873 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 8814
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||||||| ||||||||||| ||||||||| | || || || || || ||
Sbjct 8813 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 8754
Query 40903 CG 40904
||
Sbjct 8753 CG 8752
>seq725
Length=19491
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| || || |||||||| || || | || || || | ||
Sbjct 8626 ATGCAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAGAGCTCC 8685
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | || ||||| | || || || || ||||| |||| |||
Sbjct 8686 GATACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 8745
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| || || |||||||| || || | || || || ||||||||
Sbjct 8746 CAACGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACAAT 8805
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| ||| || ||||| || || | ||| |||| |||
Sbjct 8806 ATCCAGAAGGAGAGCACTCTCCATCTGGTCCTGAGATTGCGGGGTGGC 8853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515210389751680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |