Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq302 205 8e-48 seq537 132 4e-26 seq725 95.1 1e-14 >seq302 Length=64523 Score = 205 bits (226), Expect = 8e-48 Identities = 435/646 (67%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||||||| ||||||| ||||| ||| |||| || || ||| || || || || Sbjct 56020 TTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAATAGATCACGAGCA 55961 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || || || || |||||| ||| || | |||||| || || || | ||| |||| Sbjct 55960 CGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAAATATCCATATGC 55901 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||||||| || || | ||| || || ||||| |||||||| Sbjct 55900 CATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCCTGGTCGACGTAT 55841 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | ||| ||||| ||| | || | ||||| || || | ||||| || | ||| | || Sbjct 55840 CTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAAGAGCCA--TTCG 55783 Query 23579 --CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636 || || | ||||| | | || | | ||||| || | ||| || || ||| Sbjct 55782 TTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCAATACCACCGG 55723 Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 | | || || || | || || |||||| ||||| || ||||||||||||||||| | Sbjct 55722 CGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCGATGCTGTCTT 55663 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756 | || | | | | ||| ||||| | ||| || | | ||| ||| | || ||| | Sbjct 55662 CCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCAGCGTTGAAGA 55603 Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816 | || || ||| || || ||||| | |||||| || || || || || ||| | Sbjct 55602 GGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTCTCAATGACTC 55543 Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876 || | ||| |||||||| || || || || || ||||| ||||||| || || | || Sbjct 55542 TTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGCTGTGGGCGCT 55483 Query 23877 ---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAA 23933 | ||| | ||| || ||| | || || || | | || || || ||||| | Sbjct 55482 CTGCAACCTT---GCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTGAATCCGA 55426 Query 23934 AATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 |||| | ||||| ||||| ||||||| || || || || || || Sbjct 55425 AATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAA 55380 >seq537 Length=102077 Score = 132 bits (146), Expect = 4e-26 Identities = 208/295 (71%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| || ||||| |||||||||||||||| |||||||| || || Sbjct 34372 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 34431 Query 57630 TCTAAGGATCTGAGCGATTGGGA---TTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||||| || ||| | | | || || ||| || | || || | Sbjct 34432 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 34491 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || |||||||| || ||||| ||||| || ||||| | ||||| | Sbjct 34492 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCG- 34550 Query 57747 TTTTCACA--AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| |||||| || || | ||||| ||||||| ||||| || || | | Sbjct 34551 -TTTCAGCGGAGAAGTCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGA 34609 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | |||||| | || || |||| || || || |||||||||||||| | ||||| Sbjct 34610 TGGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTATATCAAGGA 34664 Score = 113 bits (124), Expect = 4e-20 Identities = 217/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| || || || ||||||||||| ||||| || ||||||| |||| || ||| Sbjct 34839 TCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGGC 34898 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| || ||||| ||||| ||||| || ||| ||| ||| | || || || || | Sbjct 34899 TGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGATG 34958 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||| | || ||||| || || ||||| | | ||||||| | | | || | | Sbjct 34959 AGGGTTTACACACTGACTTCGCCTGCCTTCTCTTCTCTCACCTGCGCCACCGCCCCAGCC 35018 Query 58159 GGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 || | | || | | || ||||| || || ||||| ||||| | ||||| |||| Sbjct 35019 CAGA--GGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCAC 35076 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || || || || || | ||||| |||||| | | |||| | ||||| || Sbjct 35077 AGATGCTCTCCCATGCGCACTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGA 35136 Query 58277 GTTTGTTGCCGACAGACT 58294 ||||||||| || |||| Sbjct 35137 GTTTGTTGCTGATCGACT 35154 >seq725 Length=19491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| || ||||| || || || || |||||| | || || || | ||||| | ||| Sbjct 8180 TCGTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCG 8239 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | || || || |||| || || |||||| | || || ||||||||||| |||| Sbjct 8240 ACAACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAA 8299 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| ||||| ||| |||| ||| | || | ||||| || ||||| || | Sbjct 8300 TCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGG 8359 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || |||||||| |||| ||| | ||| | || || Sbjct 8360 AGTCCACTCTTCACTTGGTTCTTCGTCTGCGTGGAGG 8396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || || || || ||| |||| ||||| || || | |||| | ||||| Sbjct 7887 ACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGTCC 7946 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | ||| |||||||||||| | || || |||||||| ||||| || ||||| ||||| Sbjct 7947 AAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCAAG 8006 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 |||||||| ||| | || | |||||||||||||| || || || ||||| || Sbjct 8007 CAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCCAC 8066 Query 31397 CTGGTACTTAGACTGAGGGGCGG 31419 |||| ||| | || | ||||| Sbjct 8067 TTGGTTCTTCGTCTTCGTGGCGG 8089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758777394560