Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq302 208 1e-48 seq537 116 5e-21 >seq302 Length=64523 Score = 208 bits (230), Expect = 1e-48 Identities = 584/894 (65%), Gaps = 2/894 (0%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || | |||| |||| | || ||||| ||||| | || | | Sbjct 56092 TCGAACTCATCACCATAGACATCCGCCAAGCCTGGTGCTTCATTTGGACAGAACAGAGTC 56033 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || || || | | || || ||||||||||| |||||||| ||||||| || | ||| Sbjct 56032 CATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAAT 55973 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 ||||| | | | | ||| || || || || || ||||| | ||| | | | Sbjct 55972 AGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAA 55913 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 ||||| |||||| || || | ||| ||||| | |||| || || ||||| |||||| Sbjct 55912 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 55853 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | |||||| || |||||||| |||| | | ||| |||| ||| |||||||| Sbjct 55852 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 55793 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCT 63548 ||||| || || | || ||| ||| | |||| || ||| ||||| Sbjct 55792 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCA 55733 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || || | || || |||| || || ||| | |||||||| ||||| || Sbjct 55732 ATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCG 55673 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 ||||| || || |||| | || || || || | ||| || | | | ||| || Sbjct 55672 ATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCA 55613 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 || || || | ||||||||| || || || || | |||| || | || || || ||| Sbjct 55612 GCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTC 55553 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 ||||| || || | || | || || || | || |||||||| | ||||||| Sbjct 55552 TCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGC 55493 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 || || | || ||| ||| || ||| | |||||| || | |||| || || Sbjct 55492 TGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTG 55433 Query 63849 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCC 63908 || || ||||| | ||| ||||| || ||||||| |||| | || |||| || |||| Sbjct 55432 AATCCGAAATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAACTCATCC 55373 Query 63909 TTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTT 63968 || | | | || || || ||| | ||| || || || | | | || || Sbjct 55372 GCATGTCTCATTACGATTTCATACGTACTCTGTGATATCATGGGGGCAGGACGTCCGTTC 55313 Query 63969 TTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTC 64027 || ||||| |||| | | | ||| || ||||| || | ||| | || || |||| Sbjct 55312 TTGGGATTGTGGTAGTGGTACAGATCATCTATCAC-GGACGAGAATTGCTTCTTGGTTTG 55254 Query 64028 CTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 |||||| || || |||| || || | || |||||||| || || || ||||| Sbjct 55253 CTTGTGAAGGTTGGATACAGCAATCCGAGCAGCTAGAATTGCGTAGTCTGGATG 55200 >seq537 Length=102077 Score = 116 bits (128), Expect = 5e-21 Identities = 202/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || || | ||| |||||||| | ||| || |||| || || |||||||| || Sbjct 34664 TCCTTGATATACGTATCGATGAGAAGGGAGTAAGTTTCGGAGTGGATGTTTTCCATCATG 34605 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||| || |||||||| |||| ||||| | | ||| |||||| | || || || Sbjct 34604 ATCTGGAAACCGTAGAAGCATCGGGCCTCAGGGACCTGGACTTCTCCGCTGAAACGCTCG 34545 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 | | || ||||| || |||||||| || || || || ||||| || ||| || Sbjct 34544 ACGAGGTTCTCATTGACAATTCCATCCGACGCGGCGAAGAATGCCAAGACGTGTGAGATG 34485 Query 34023 AAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCC 34079 || ||| ||||| | | | |||| ||| |||| | |||||| || | ||| Sbjct 34484 AAGTATCGCTCGTCATCATTCAATCTATTGTTCCAGTCATGAAGATCTTTCGAGAGATCA 34425 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 |||||||| | |||||||| ||||||||||| || || ||||| | |||||| Sbjct 34424 ACTTCTTCTGCGGTCCAAAACGATGCCTCTGCTTTCTTGTACATTTGCCAGAT 34372 Score = 102 bits (112), Expect = 1e-16 Identities = 293/448 (65%), Gaps = 2/448 (0%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| || || ||||| ||||| ||||| || || || || ||||| ||||| Sbjct 35287 CATAACACCAGCCTTCTGGTAGTCACCAACACGCTTCTCAAAGAAGTTAGTCTTTCCAGT 35228 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || || || ||||||||||| || || |||||| ||||| | ||| ||| || Sbjct 35227 CAGCGAGATGTTGTCCATGAAATCGAATGGGTTGGTAGAGTTGTAGACTTTCTTATTGCC 35168 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 || || | | || ||| || || || || || ||| ||| | | || Sbjct 35167 CAGAGCAACGAGGAGTCGATCAGCAACAAACTCGATGTATTGGCACATGAGCTTGGCGTT 35108 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 |||||| | ||| ||| ||||| | || || || || || || |||| || || Sbjct 35107 CATTCCGAGAAGTGCGCATGGGAGAGCATCTGTGAGGAACTCCTGCTCGATGGCGACAGC 35048 Query 33518 ATTTGTTATAATAAATCT-AACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 | ||| || || ||| ||| | ||| || || | || | || || | Sbjct 35047 TTCTGTGATGATTT-TCTGAACAGCCTCTGGGCTGGGGCGGTGGCGCAGGTGAGAGAAGA 34989 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | || ||||| || ||| | |||||| || | | || | || || ||||| | Sbjct 34988 GAAGGCAGGCGAAGTCAGTGTGTAAACCCTCATCACGAGAGATAAGCTCATTGGAAAAGG 34929 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | || || ||||| ||||||||||| || ||||| || || || || || ||||| | Sbjct 34928 TAAGGCCTGGCATAAGGCCACGCTTCTTCAGCCAGAAGATTGACGCAAAGGATCCACTGA 34869 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||||| ||||| || ||||||||||| Sbjct 34868 AGAAGATACCTTCGACAGCAGCAAAGGC 34841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806830119040