Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq725 104 2e-17 seq1192 84.2 2e-11 >seq725 Length=19491 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||||||||||||| |||| |||||||||||||| || || || ||||| || Sbjct 8780 TCCTCGAGCTGTTTACCAGCAAAGATTAGACGTTGCTGATCCGGTGGGATACCTTCCTTA 8721 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | || |||| | ||| || |||| || | Sbjct 8720 TCTTGGATTTTAGATTTAACATTATCAATGGTATCGGAGCTCTCAACTTCAAGCGTAATA 8661 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||||||||| ||||| ||||| |||||||| Sbjct 8660 GTTTTGCCGGTCAGGGTTTTAACGAAGATTTGCAT 8626 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||| || |||||||| | || | || || || ||| Sbjct 8600 TGAAGAGTGGACTCCTTTTGGATATTATAATCCGAGAGAGTACGACCATCCTCAAGTTGT 8541 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || | || || || ||||||||||| || ||||||||||| || ||| |||| Sbjct 8540 TTTCCGGCGAAAATAAGGCGCTGCTGATCGGGGGGGATGCCTTCTTTATC-TTGAATTTT 8482 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || |||| | | || | || || | ||| || |||| || | ||||| ||||| Sbjct 8481 TGATTTAACATTGTCAATCGTATCTGAACTCTCGACTTCAAGTGTGATGGTCTTTCCGGT 8422 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| |||||||| Sbjct 8421 CAGGGTTTTAACGAAGATTTGCAT 8398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || ||||| || ||||| Sbjct 8396 CCTCCACGCAGACGAAGAACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGAA 8337 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || || || |||| || || ||||| || ||||| Sbjct 8336 AGGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCTGGAGGA 8277 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || || |||| | ||| | | || | || |||| | |||||| Sbjct 8276 ATGCCTTCTTTATC-TTGTATTTTCGACTTAACGTTGTCGATGGTATCGGATGACTCCAC 8218 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 ||| | ||| | ||||| ||||| | ||||| |||| Sbjct 8217 CTCTAGGGTGATGGTCTTACCGGTGAGAGTTTTGACGA 8180 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | ||| ||||| | || ||||| || |||||||||||||| Sbjct 8090 GCCGCCACGAAGACGAAGAACCAAGTGGAGAGTTGACTCCTTCTGAATGTTATAATCAGA 8031 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || | ||| || || || | |||||||||||||| || ||||| Sbjct 8030 AAGGGTGCGACCGTCCTCCAACTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCAGGAGG 7971 Query 139657 TATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| ||||| ||| |||| Sbjct 7970 AATCCCTTCCTTGTC-CTGAATTTT 7947 >seq1192 Length=144406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | || ||||| || |||||||| || || Sbjct 8740 CCACCACGAAGACGCAGGACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAG 8799 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||||||||| || |||||||||||||||| |||||||| Sbjct 8800 AGGGTGCGACCGTCCTCGAGCTGTTTACCGGCGAAGATCAGACGTTGCTGGTCGGGAGGG 8859 Query 139658 ATGCCTTCTTTGTC 139671 || || || ||||| Sbjct 8860 ATTCCCTCCTTGTC 8873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055517305600