Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq537 132 5e-26 seq725 98.7 1e-15 seq639 96.9 3e-15 seq1192 91.5 1e-13 >seq537 Length=102077 Score = 132 bits (146), Expect = 5e-26 Identities = 323/483 (67%), Gaps = 10/483 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || ||||| ||||| || || ||| ||| ||||| || |||||| Sbjct 35253 TTCTCAAAGAAGTTAGTCTTTCCAGTCAGCGAGATGTTGTCCATGAAATCGAATGGGTTG 35194 Query 132685 GCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||||| | ||| |||| ||| | ||||| || | || || || ||| Sbjct 35193 GTAGAGTTGTAGACTTTCTTATTGCC---CAGAGCAACGAGGAGTCGATCAGCAACAAAC 35137 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799 ||||||||||| ||||| | || || || | ||| || || |||| || || || | Sbjct 35136 TCGATGTATTGGCACATGAGCTTGGCG-TTCATTCCGAGAAGTGCGCATGGG-AGAGCAT 35079 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | ||||| || |||||||||||||| || || |||| ||||| | ||| | | | Sbjct 35078 CTGTGAGGAACTCCTGCTCGATGGCGACAGCTTCTGTGATGATTTTCTGAACAGCCTCTG 35019 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| || || || || || ||| | | ||| || ||||| || || |||| Sbjct 35018 GGCTGGGGCGGTGGCGCAGGTGAGAGAAGAGAAGGCAGGCGAAGTCAGTGTGTAAACCCT 34959 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || | || || || || ||| || || | ||| ||||| ||||| || || || | Sbjct 34958 CATCACGAGAGATAAGCTCATTGGAAAAGGTAAGGCCTGGCATAAGGCCACGCTTCTTCA 34899 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || || | || || || ||||||| || ||||| || || || || | Sbjct 34898 GCCAGAAGATTGACGCAAAGGATCCACTGAAGAAGATACCTTCGACAGCAGCAAAGGCGA 34839 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 | || |||| | || || | |||||| |||||||||| | ||||| || |||| Sbjct 34838 CGAGACGCTGTGCAAAGGTAGACTCTTTGTCTTCGATCCAGCGGATAGCCCAATCAGCCT 34779 Query 133100 TTT 133102 ||| Sbjct 34778 TTT 34776 Score = 129 bits (142), Expect = 6e-25 Identities = 194/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || || |||||||| || || |||| ||||| | ||| ||||| ||| || || Sbjct 34655 TACGTATCGATGAGAAGGGAGTAAGTTTCGGAGTGGATGTTTTCCATCATGATCTGGAAA 34596 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || ||||| ||||| |||||| |||||||||||| || || Sbjct 34595 CCGTAGAAGCATCGGGCCTCAGGGACCTGGACTTCTCCGCTGAAACGCTCGACGAGGTTC 34536 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 || ||||| || || || |||||||| || |||| ||||| |||||| | ||| Sbjct 34535 TCATTGACAATTCCATCCGACGCGGCGAAGAATGCCAAGACGTGTGAGATGAAGTATCGC 34476 Query 133348 TCGTTGTCGTTCAAGC---GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| || ||||| | | |||||| | || || || || || || || || Sbjct 34475 TCGTCATCATTCAATCTATTGTTCCAGTCATGAAGATCTTTCGAGAGATCAACTTCTTCT 34416 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||||||||| ||||| ||||| |||||||| Sbjct 34415 GCGGTCCAAAACGATGCCTCTGCTTTCTTGTACAT 34381 >seq725 Length=19491 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| || || || || |||||||| | || |||||| | Sbjct 8397 AATGCAAATCTTCGTTAAAACCCTGACCGGAAAGACCATCACACTTGAAGTCGAGAGTTC 8456 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | || || | ||||| |||||| | || ||||| || || ||| |||| | Sbjct 8457 AGATACGATTGACAATG-TTAAATCAAAAATTCAAGATAAAGAAGGCATCCCCCCCGATC 8515 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| || ||||| || || || | || || ||| || || | Sbjct 8516 AGCAGCGCCTTATTTTCGCCGGAAAACAACTTGAGGATGGTCGTACTCTCTCGGATTATA 8575 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||| | || || ||| | || || ||| Sbjct 8576 ATATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGT 8613 >seq639 Length=25736 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT- 38311 ||||| || || ||||||||||| ||||||||| |||| |||||| ||| ||| | | | Sbjct 21993 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATC 21934 Query 38312 GCAAACGCTTAAAG-AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | ||||| ||||| | ||||| ||||| || || |||| || ||||| Sbjct 21933 GACAATG--TAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGAT 21876 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| ||||| ||||| || |||| || || || | || || || ||||| | Sbjct 21875 TGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGA 21816 Query 38431 AGGAAG 38436 ||| || Sbjct 21815 AGGTAG 21810 >seq1192 Length=144406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| || ||||||| || || || || | ||| || |||||||| || Sbjct 8873 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 8814 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| ||||||||||| || ||||| |||| || || | || ||| Sbjct 8813 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 8754 Query 38457 CGT 38459 ||| Sbjct 8753 CGT 8751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164247045120