Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq583 432 5e-116 seq482 159 4e-34 seq432 134 2e-26 seq416 105 8e-18 >seq583 Length=30596 Score = 432 bits (478), Expect = 5e-116 Identities = 861/1262 (68%), Gaps = 15/1262 (1%) Strand=Plus/Minus Query 6887 TTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTT 6946 ||||| | || || || || |||||| || | |||||||| | |||||| ||| Sbjct 3083 TTCTTGGTGGGGATAGTGGTGTTTCTCTTGATGAGTGGGGTCATGACGCCACCCGCAGTC 3024 Query 6947 TCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTC 7006 |||| || | ||||||||| | ||||| | ||| | | || | ||| | | | Sbjct 3023 TCGATACCGACAGACAGAGGAGCGACGTCAAGGAGAAGGATTTCATTGGTAGACTTGGAC 2964 Query 7007 --CCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063 | | || || | ||||||||||| ||||| | || || ||||| || ||||| ||| Sbjct 2963 GTCGTGTCGCCAGACAAGATGGCGGCCTGGACGGCGGCACCATATGCAACAGCCTCGTCG 2904 Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATT 7123 ||||| || | || || | || || ||||| || | || |||| | | || || Sbjct 2903 GGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAAGAAGTCGGATACAAGCTTCTGGATG 2844 Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATC 7183 ||||| || || |||||||| || | || || |||| || | |||||||||||| Sbjct 2843 CGGGGGATACGGGTGGATCCACCCACAAGGACTATCTCATGGACGCTAGATTTATCGATC 2784 Query 7184 TTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACAC 7243 |||| || || || || ||||| ||||| ||||| | |||| || Sbjct 2783 TTTGCATCGCGGAGCACGCGCTCAACAGGGTCCATGGTGGAGCGGAAGAGGTCCTGGCAA 2724 Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| ||||| || ||||| ||||||||||||| ||| ||||||| || Sbjct 2723 AGCTCCTCGAAACGAGCACGAGTGATGGAGGTATAGAAATCAATGCCCTCGTATAGGGAG 2664 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || ||||| |||| ||| ||||| | || || | || ||||| || || || || || Sbjct 2663 TCGATTTCGATGGATGTCTGTGCGGCAGAGGAGAGGGTGCGCTTGGCACGTTCGCAGGCA 2604 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | ||| || |||||||| | || || | ||| ||||| || || || || Sbjct 2603 GTGCGGAGACGGCGGAGGGCACGAGCATTTGAAGATAGATCCTTCTTGTGCTTGCGCTTG 2544 Query 7424 AACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 || || || | | ||||| | ||| | ||||||||| |||||||| | || || Sbjct 2543 AATTCATTGACA-AAGTGGTTCACGAGGCGGTTATCGAAATCCTCACCACCAAGATGGGT 2485 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 || || || || | |||||||| ||||| || |||| || | | | || ||||| Sbjct 2484 GTCACCAGCAGTGGACTTGACTTCGAAGATGCCCTCTTCGATAGTGAGGAGGGAGACATC 2425 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTCTTAT 7601 ||| ||||||||||||| ||| || ||||| ||||| ||| || | || ||||| | Sbjct 2424 AAAGGTACCACCACCCAAGTCGAAGATGAGAACGTTGCGT-TCACCCTCGGCCTTCTTGT 2366 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGG 7660 | ||||| || || || || || || || ||||| || ||||| |||| |||| |||||| Sbjct 2365 CAAGACCATAGGCAATGGCGGCAGCAGTGGGTTCGTTGATAATCCGAAGGACA-TTCAGG 2307 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||| || | ||||| || || ||||| || || |||||||| || ||||| ||| Sbjct 2306 CCAGCGATGAGACCAGCATCCTTGGTAGCTTGACGCTGGGAATCGTTGAAATAGGCGGGG 2247 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || ||||| |||| | || | || || || || || || | ||| |||| Sbjct 2246 ACAGTAACGACGGCGTTGTTAACAGTGCCTCCAAGGTAGGACTCGGCAGTTTCTCTCATC 2187 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAA 7840 || || || ||||| || || || || || | | ||||| ||| ||| || || || Sbjct 2186 TTCGTCAGGACCATGGAGGAGATTTCCTCCGGGGTGAACTGCTTCTCTTCGCCCTTGAAC 2127 Query 7841 TCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTC 7900 ||||| || | || || || | || | || ||||| | | | | ||| Sbjct 2126 TCAACGGAGATGACTGGCTT-TC--CCGCCTTGTCAATGACCTTGAAGGGGAAGTGCTTC 2070 Query 7901 ATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAA 7960 || ||| |||||||| | || | || || | || || |||||||| || ||||| Sbjct 2069 ATGTCGGATTGGACCTCAGGATCGGCGAATTTGCGGCCAATGAGACGCTTGGCGTCAAAG 2010 Query 7961 ACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCA 8020 |||||||| |||||||||||| ||| || || || || |||||||| ||||| || Sbjct 2009 ACTGTGTTGGAGGGGTTCATGGCGACTTGATTTTTGGCGGCATCCCCGATCAGACGCTC- 1951 Query 8021 TTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATA 8080 | || || || || ||| |||| || || || || || || |||||||| ||||| Sbjct 1950 --GGTGTCTGTGAAGGCAACGAACGAGGGTGTGGTCCGGTTACCCTGGTCGTTGGCAATG 1893 Query 8081 ATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATA 8140 ||||| | | ||| | | ||| || |||||||| ||||| || || | ||| ||| Sbjct 1892 ATTTCAATTCTGTCATCCCGGAAGATACCCACGCACGAGTACGTGGTCCCGAGATCGATA 1833 Query 8141 CC 8142 || Sbjct 1832 CC 1831 >seq482 Length=106560 Score = 159 bits (176), Expect = 4e-34 Identities = 234/328 (71%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||||||||| || || || || || || ||| || ||| || Sbjct 81814 TCGAAATCTTCACCACCCAAGTGGGTGTCACCGGCTGTAGCCAGGACCTCGAAGGCGCCG 81755 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | ||||| ||||| ||||| ||||| || ||| | | || | Sbjct 81754 TTGTCGATGGACAGAAGAGAAACGTCAAAGGTACCTCCACCGAGATCATAGACGATGA-- 81697 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||||| | ||||||| |||||||| |||||||| || || || ||||| Sbjct 81696 -TC-TGGCGCTCGTCCCCGGTCTTATCCAGACCGTATGCGATAGCGGCGGCGGTGGGTTC 81639 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | | ||| ||| ||| ||||||||||| || | ||||| || || || |||| Sbjct 81638 GTTGACGACACGGAGAACGTTGAGGCCAGCAATGGTGCCGGCATCCTTGGTAGCCTGTCT 81579 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || |||||| |||||||| || || || ||||| |||| ||||| |||| ||||| Sbjct 81578 CTGGTTATCGTTGAAGTAGGCGGGAACAGTAACGACGGCGTTGGTGACAGTCTTTCCGAG 81519 Query 7756 ATACGATTCCGCGATATCTTTCATTTTG 7783 || || |||| |||||||||||| Sbjct 81518 GTAGTTCTCAGCGACCTCTTTCATTTTG 81491 >seq432 Length=131617 Score = 134 bits (148), Expect = 2e-26 Identities = 279/407 (69%), Gaps = 9/407 (2%) Strand=Plus/Plus Query 11281 TCAAATCTACCGGGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCT 11340 ||||||| ||| || || || ||||| | || || ||||||| || || ||| || | Sbjct 105109 TCAAATCGACCAGGTCGCAACAACGCCTTATCTAGGATATCGACTCGATTGGTTCCAGCC 105168 Query 11341 ATAACAACAATTTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAATT 11400 | ||| |||| || | | | ||| ||||||||||| || | | || || | | Sbjct 105169 AGAACCACAACTTGATCCGAGGTGTTGAAGCCATCCATTTCGGTCAGGATCTGATTCAAT 105228 Query 11401 GTTTGTTCACGCTCATCGTTTGCCGCAA---ACCCATTCATACTTCTTTTCTTACCAATC 11457 || || |||||||| ||| | || | | ||| | ||| ||| ||||| Sbjct 105229 GTGCTCTCGCGCTCATCATTTCCACCACCATAAGCGTTCTTCGATCTCGACTTTCCAATA 105288 Query 11458 GCATCAATTTCATCTATAAAGATAATACACGGT-TGATTTTCACGTGCCAATTCAAATAT 11516 |||||||| ||||| || || |||||||| ||| || ||||| || || | |||| | Sbjct 105289 GCATCAATCTCATCAATGAATATAATACAAGGTGTGTTTTTC-CGGGCGGTTGCAAACAG 105347 Query 11517 ATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCC-CGAAC 11575 ||||||||||| | ||| ||||| |||||||| || |||||| ||||| | ||| Sbjct 105348 ATCACGGACTCGGGAGGGGCCAACGCCAACAAACATCTCGACGAACTCAGACCCGCTAAC 105407 Query 11576 ACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTG 11635 ||| | ||| |||||| || || || ||| |||| ||||| | || ||||| | Sbjct 105408 GCTGTA-AAATGGAACGCCTGACTCGCCAGCTGTAGCCTTTGCTAGCAACGTCTTACCGG 105466 Query 11636 TACCTGGTTTACCTGTTAATAAT-GCACCCCTTGGTATTTTAGCACC 11681 |||| ||| |||| || ||| ||||| || || || || ||||| Sbjct 105467 TACCCGGTGGCCCTG-AAAGAATAGCACCTCTGGGGATCTTGGCACC 105512 >seq416 Length=49574 Score = 105 bits (116), Expect = 8e-18 Identities = 226/331 (68%), Gaps = 14/331 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||| | || || || || ||| | |||||||| || | ||| Sbjct 39118 ATCGAAGTCCTCACCACCAAGATGAGTGTCACCATTGGTAGACTTGACTTCGAACACACC 39177 Query 7516 TCCTTCAATGTTT-AACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||| ||| || || | | | ||||| ||||||||||| || || | | | Sbjct 39178 --CTTCTGGATTTCAAGAATGGAGATGTCAAAAGTACCACCACCAAGATCGTAGACGGCA 39235 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | ||| | || | || |||||||||| || | ||| || || || || Sbjct 39236 ACGATGCGATCCTGCTC---GCGCT---CGAGACCGTAGGCAAGAGCAGCAGCGGTAGGC 39289 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 ||||| | || ||| ||| ||| || || || || ||| | |||||||| || |||| Sbjct 39290 TCATTGACAACACGGAGAACGTTGAGACCGGCGAT--TTGACCGGCATCTTTGGTAGCTT 39347 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | ||||| ||||| || |||||||| ||||| || ||||| | | | |||| || | Sbjct 39348 GACGTTGAGAATCATTGAAGTAGGCGGGGACTGTGACGACACCATTCTTGACGGGTTTGC 39407 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTT 7782 | ||||| | ||| || | || |||||||| Sbjct 39408 CAAGATAGGCTTCAGCAGTCTCCTTCATTTT 39438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635121939229120