Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq583 114 8e-20 seq725 111 1e-18 seq416 91.5 1e-12 >seq583 Length=30596 Score = 114 bits (126), Expect = 8e-20 Identities = 321/488 (66%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| |||||||| ||||| ||||| | || ||||| || | ||| | || || || Sbjct 1888 GAAATCATTGCCAACGACCAGGGTAACCGGACCACACCCTCGTTCGTTGCCTTCACAGAC 1947 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| || || ||||| || ||| |||||| || || || || || Sbjct 1948 ACCGAGCGTCTGATCGGGGATGCCGCCAAAAATCAAGTCGCCATGAACCCCTCCAACACA 2007 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | ||||| || || | | ||||| || || || | ||| | |||||||| || Sbjct 2008 GTCTTTGACGCCAAGCGTCTCATTGGCCGCAAATTCGCCGATCCTGAGGTCCAATCCGAC 2067 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| || | | || || ||| || | | Sbjct 2068 ATGAAGCACTTCCCCTTCAAGGTCATTGACAAGGCGGGAAAGCCAGTCATCTCCGTTGAG 2127 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || ||| || || || | ||||| |||| || || ||||| | | | Sbjct 2128 TTCAAG--GGCGAAGAGAAGCAGTTCACCCCGGAGGAAATCTCCTCCATGGTCCTGACGA 2185 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | |||| || ||| || || |||||| || | | || || ||||| Sbjct 2186 AGATGAGAGAAACTGCCGAG-TCCTACCTTGGAGGCACTGTTAACAACGCCGTCGTTACT 2244 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| || ||||| || |||||||| || || ||||| || || || Sbjct 2245 GTCCCCGCCTATTTCAACGATTCCCAGCGTCAAGCTACCAAGGATGCTGGTCTCATCGCT 2304 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || ||||| | || ||||| || ||||| || || ||||| |||| ||||||||| Sbjct 2305 GGCCTGAATGTCCTTCGGATTATCAACGAACCCACTGCTGCCGCCATTGCCTATGGTCTT 2364 Query 474869 GATAAGAA 474876 || ||||| Sbjct 2365 GACAAGAA 2372 >seq725 Length=19491 Score = 111 bits (122), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || || ||||| || || || || || | ||| || || | ||||| | ||| Sbjct 8837 AGGACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCCGAAAGAGTCCGACCATCC 8778 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || || || || |||||||| || |||||||| ||||| || || || |||||||| ||| Sbjct 8777 TCGAGCTGTTTACCAGCAAAGATTAGACGTTGCTGATCCGGTGGGATACCTTCCTTATCT 8718 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAATAGT 480739 || || || ||| ||| ||||| ||||| | | | | || || |||| |||||||| Sbjct 8717 TGGATTTTAGATTTAACATTATCAATGGTATCGGAGCTCTCAACTT-CAAGCGTAATAGT 8659 Query 480740 TTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||| || || |||||||| ||||| Sbjct 8658 TTTGCCGGTCAGGGTTTTAACGAAGATTTG 8629 >seq416 Length=49574 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || |||||||||||||||||||| || |||||||| || ||| Sbjct 39381 ACAGTCCCCGCCTACTTCAATGATTCTCAACGTCAAGCTACCAAAGATGCCGGTCAAATC 39322 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| || ||| | ||| || | ||||| || || || || || ||||| || ||| Sbjct 39321 GCCGGTCTCAACGTTCTCCGTGTTGTCAATGAGCCTACCGCTGCTGCTCTTGCCTACGGT 39262 Query 474866 CTTGA 474870 || || Sbjct 39261 CTCGA 39257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268120519842464