Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq725 134 3e-26 seq639 93.3 8e-14 >seq725 Length=19491 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| || || || || ||||||||||| || ||| | | ||| Sbjct 8613 ACGGAGGACGAGATGAAGAGTGGACTCCTTTTGGATATTATAATCCGAGAGAGTACGACC 8554 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||||||||| || || || || | || ||||| || || || ||||| || Sbjct 8553 ATCCTCAAGTTGTTTTCCGGCGAAAATAAGGCGCTGCTGATCGGGGGGGATGCCTTCTTT 8494 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| |||| ||| ||||| ||||||||||| | || ||||| | || || Sbjct 8493 ATCTTGAATTTTTGATTTAACATTGTCAATCGTATCTGAACTCTCGACTTCAAGTGTGAT 8434 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || |||| || || || || || |||||| Sbjct 8433 GGTCTTTCCGGTCAGGGTTTTAACGAAGATTTGCATT 8397 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| | ||| || | || ||||| || ||||| ||||| || || || Sbjct 8852 CCACCCCGCAATCTCAGGACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCCGAA 8793 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || || || ||||| |||||||||||||| | ||| ||||| || || Sbjct 8792 AGAGTCCGACCATCCTCGAGCTGTTTACCAGCAAAGATTAGACGTTGCTGATCCGGTGGG 8733 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || |||||||||||||| || || | ||| ||||| ||||| ||||| || | || || Sbjct 8732 ATACCTTCCTTATCTTGGATTTTAGATTTAACATTATCAATGGTATC-GGAGCTCTCAAC 8674 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || || ||||| |||| || || || || || ||||| Sbjct 8673 TTCAAGCGTAATAGTTTTGCCGGTCAGGGTTTTAACGAAGATTTGCAT 8626 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| ||||| || || ||||| || ||||||||||| || | | ||| Sbjct 8078 ACGAAGAACCAAGTGGAGAGTTGACTCCTTCTGAATGTTATAATCAGAAAGGGTGCGACC 8019 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | || || || || || || || | ||| || || ||||| || |||||||| Sbjct 8018 GTCCTCCAACTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCAGGAGGAATCCCTTCCTT 7959 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||| || | || ||| | || || |||||| | || ||||| | ||||| Sbjct 7958 GTCCTGAATTTTGGACTTGACACTATCGATTGTATCAACCGACTCAACTTCGAGGGTTAT 7899 Query 82775 CGTCTTGCCTGT 82786 ||||| || || Sbjct 7898 AGTCTTTCCGGT 7887 >seq639 Length=25736 Score = 93.3 bits (102), Expect = 8e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| |||||||||||| ||| ||| ||||| || || || || ||||| ||||| Sbjct 21815 TTCTGGATATTATAATCACTTAGCGTTCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 21874 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | || || ||||| || || || || ||||| || || || || | |||||||| || Sbjct 21875 AATCGCTGCTGATCGGGTGGGATACCCTCCTTGTCCTGTATTTTCGACTTTACATTGTCG 21934 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || ||||| | | || || || | || || |||||||| || | ||||| || || Sbjct 21935 ATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 21993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981809991023752