Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq302 244 1e-59 seq537 123 3e-23 >seq302 Length=64523 Score = 244 bits (270), Expect = 1e-59 Identities = 599/899 (67%), Gaps = 12/899 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| ||||| || | ||||| |||| || || |||||||||||| | || | | Sbjct 56092 TCGAACTCATCACCATAGACATCCGCCAAGCCTGGTGCTTCATTTGGACAGAACAGAGTC 56033 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || || ||| | || ||| ||||||||||||||||| || ||||||| || | || Sbjct 56032 CATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAAT 55973 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 ||||| | | | | |||||| || || ||||| ||||| | || || | | Sbjct 55972 AGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAA 55913 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 ||||| ||||||||| || || || || || | |||| || || || || |||||| Sbjct 55912 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 55853 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | |||||||||||||||||| | || | ||||| |||| ||| || || || Sbjct 55852 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 55793 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 ||||| ||||||| ||| || || | | || || ||| ||||| Sbjct 55792 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCA 55733 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || || | || || |||||||||||| ||||| |||||||| || ||||| Sbjct 55732 ATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCG 55673 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 ||||| || || |||| | || || || || | ||| ||| | || ||| || Sbjct 55672 ATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCA 55613 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 || || || | |||||||| || |||||||| | |||| || | || || ||||| Sbjct 55612 GCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTC 55553 Query 70057 TCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||||| || ||| | || | | | || || || || || |||||||| | ||| || Sbjct 55552 TCAATGACTCTTTCCACGTCATCTCCG-TGGATCCCAATAGCAACACGCATAATCATGTG 55494 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||| || || ||| | || ||| ||| | || ||| || | ||||| || || Sbjct 55493 CTGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTT 55434 Query 70176 AAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATC 70235 || || ||||| | ||| ||||| | ||||||| |||| | || || | | ||| Sbjct 55433 GAATCCGAAATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAACTCATC 55374 Query 70236 CTTATATTTGGTAACTATATCCATA-ACAGTAGGTGAGATAATCGG---AGATCGTTTAC 70291 | || | | | || || | |||| | | |||| || || || || ||| | Sbjct 55373 CGCATGTCTCATTACGAT-TTCATACGTACTCTGTGATATCATGGGGGCAGGACGT---C 55318 Query 70292 CATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTA-AATAGttttttt 70350 | || || ||||| |||| | | | ||| || || || || | ||| | || || Sbjct 55317 CGTTCTTGGGATTGTGGTAGTGGTACAGATCATCTATCAC-GGACGAGAATTGCTTCTTG 55259 Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 |||| |||||| | || |||| || || | || |||||||| || ||||| ||||| Sbjct 55258 GTTTGCTTGTGAAGGTTGGATACAGCAATCCGAGCAGCTAGAATTGCGTAGTCTGGATG 55200 Score = 118 bits (130), Expect = 1e-21 Identities = 698/1105 (63%), Gaps = 25/1105 (2%) Strand=Plus/Minus Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426 ||||| || ||||| || || | || |||| ||||||| ||||| ||||| || || Sbjct 57311 ATCCACAGTGAACTGGATTGGAGCAGACGCGGCCATTGTACGGAGATAATACATGCCAGT 57252 Query 68427 TTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATC 68486 |||| || || |||| ||| ||| ||||| || || | || | || || Sbjct 57251 CTTCAAGCCGAGTTTCCAGCCGGTGAAGTGCATGCTGGTAATCTTACCCATGGTGGGCTC 57192 Query 68487 GGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCAT 68546 | |||||||| | |||||| ||| |||||||| || |||| ||| || ||||| Sbjct 57191 CTTCAAGTGAATATTGAGAGATTGAGATTGGTCGATGAAGGCACCTCGATCGGCAGCCAT 57132 Query 68547 TTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATC 68606 | | ||| | |||| |||||||| | || || ||| ||||||||| | Sbjct 57131 CTGAACAATGGTTCGCTGAGAGATTTCCCAGACGGTTTTGTAAAGTGCTTTGATATCCTG 57072 Query 68607 TGGAAGGCTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663 ||| | | | | ||||| ||||| || ||||| | |||||| |||||| || | Sbjct 57071 TGGGATATTGGGAATGTTTTGGATGGAGCCTCCATCTGCAATAATTCGATTCTTCATGTT 57012 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 || ||| | ||| | | | | || ||| || || ||||| || Sbjct 57011 GTCGGACCAGAGACCCAAGTCCACCAGGTCCTTCAAAAGCCACGGGTTGACAATTTGGAA 56952 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 || || | | || | || | ||| |||||| ||| || ||||| | |||| || Sbjct 56951 CTCGCCTGCAAGGACACGGCGCGAGTAGATATTAGAGGTGTAAGGTTCGAAGCATTCGTT 56892 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 ||| ||||| || ||| ||||| ||||| || || || | ||||| || | Sbjct 56891 GAATCCAAGAATCTGGCTAGTGCTGGCAGTAGGCATGGGAGCAACAAGCAAACTGTTGCG 56832 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTAC 68903 | ||||| | ||| | | ||| ||| | ||||||||| ||||| | || Sbjct 56831 GACTCCATGCTTAGCGATCTCCTGTTTCAGAGAATCCCAATCCCAGAGATCGGTGGGAGT 56772 Query 68904 AACATTCCAAAGATCGTATTGTAGAATTCC--GTTACT-TGCATATGATCCATTATATGT 68960 ||| ||| | ||| || || || || || || | || | || || | ||||| Sbjct 56771 GACACCCCACATATCATACTGAAGGATGCCCTGTGAGACTGGA---GAACCTTCATATGA 56715 Query 68961 TTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCTAATGCAC-CGTAATAA 69018 ||| || || || | |||||| ||||| || || || || ||| ||| Sbjct 56714 GGAATATGGGCCGTCAACCTTAGCTAGCTCACAGGACGCAGTCAAA--CAGGCGTGGTAA 56657 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATG 69077 |||||||| ||||| | |||| | | |||| ||||| | ||| |||||| | Sbjct 56656 ATTGTTTCAAAAATTTGAATATTCAACTGCTTG-GCTTCAGGGGAATCAAATGGAAGTCG 56598 Query 69078 TAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137 ||| | || ||||| || | |||||||| || | || || | ||| | Sbjct 56597 CAAAGCGAGGAAAGCATCAGCAAGACCCTGAACACCGCAGGCAATTGGGCGATGGCGGAA 56538 Query 69138 ATTTGAACTTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTATTAAGAT 69196 || | || ||||| | || | ||||| || || || || ||| | ||||| | Sbjct 56537 GTTGCTTCGTTTGGCTTCCTCGACT-GGATAGTAGTTTCGGTCGATGATTCTGTTAAGGT 56479 Query 69197 TTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA 69256 | || || || |||| | || || | || ||| ||||||| || |||| | | Sbjct 56478 TGCGAACGACGACTTGAGTTACTTCGTGGAGCTTGCCAAAATCATATTCTCCACGCACAG 56419 Query 69257 CAAACA------TATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAAT 69310 || || || | || | || || | |||||||| || || |||| || | Sbjct 56418 CATCCACGAAGGTAGGTAAGGCAATGGAAGCCAAGTTACAAACAGCAACTTCATCAGG-T 56360 Query 69311 TTGCA-TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 ||| |||| || ||||| || |||||||| | | | ||||||||||| || | Sbjct 56359 GAGCAGTATTCGATGATCTCGGTGCATAGATTGGAGCTTCTAATAGTCCCCAGGTTCTTT 56300 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| ||||| || || |||||||| || ||||| || ||||||| ||| | Sbjct 56299 TGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCAGTT 56240 Query 69430 TGAGATTCGATAATAGATTTCCAAA 69454 |||| |||| ||||| | ||||| Sbjct 56239 TGAGCCTCGAGAATAGCATACCAAA 56215 >seq537 Length=102077 Score = 123 bits (136), Expect = 3e-23 Identities = 183/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| || ||||||||||| ||| ||||| || ||||| || |||| || |||| | Sbjct 34630 TTTCGGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCAGGGA 34571 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 || || ||| | || | || | | || ||||| || |||||||| |||| Sbjct 34570 CCTGGACTTCTCCGCTGAAACGCTCGACGAGGTTCTCATTGACAATTCCATCCGACGCGG 34511 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CC 40088 | || |||||||| || ||| || || ||| || || ||||| |||| || Sbjct 34510 CGAAGAATGCCAAGACGTGTGAGATGAAGTATCGCTCGTCATCATTCAATCTATTGTTCC 34451 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||||| | |||||| || | ||| |||||||| || ||||||||||| |||||||| | Sbjct 34450 AGTCATGAAGATCTTTCGAGAGATCAACTTCTTCTGCGGTCCAAAACGATGCCTCTGCTT 34391 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 34390 TCTTGTACATTTGCCAGAT 34372 Score = 111 bits (122), Expect = 2e-19 Identities = 301/460 (65%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 || |||||| || || ||||| |||||||| || ||||| || || ||||| || || Sbjct 35290 TGCCATAACACCAGCCTTCTGGTAGTCACCAACACGCTTCTCAAAGAAGTTAGTCTTTCC 35231 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 || || || || ||||||||||| || || || || | || || ||| ||| Sbjct 35230 AGTCAGCGAGATGTTGTCCATGAAATCGAATGGGTTGGTAGAGTTGTAGACTTTCTTATT 35171 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 || | | | | || ||| |||||||| || |||||| ||| | | Sbjct 35170 GCCCAGAGCAACGAGGAGTCGATCAGCAACAAACTCGATGTATTGGCACATGAGCTTGGC 35111 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||||| | ||| ||| ||||| || || || ||||| | |||||| | || Sbjct 35110 GTTCATTCCGAGAAGTGCGCATGGGAGAGCATCTGTGAGGAACTCCTGCTCGATGGCGAC 35051 Query 39550 GGCCTCTGTTATTATCGATGTT----ACTACCTCATCACTCGGTGGATGCAATAAATGTT 39605 || ||||| || ||| || || |||| || || | || | || Sbjct 35050 AGCTTCTGTGAT----GATTTTCTGAACAGCCTCTGGGCTGGGGCGGTGGCGCAGGTGAG 34995 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 || | | ||||||||||||| |||| |||||||| | | || | || || | Sbjct 34994 AGAAGAGAAGGCAGGCGAAGTCAGTGTGTAAACCCTCATCACGAGAGATAAGCTCATTGG 34935 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 |||| || || || ||||| || |||||||| || ||||| || || | ||||| |||| Sbjct 34934 AAAAGGTAAGGCCTGGCATAAGGCCACGCTTCTTCAGCCAGAAGATTGACGCAAAGGATC 34875 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 || |||||||| ||||| || || ||||| || || || Sbjct 34874 CACTGAAGAAGATACCTTCGACAGCAGCAAAGGCGACGAG 34835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897053859520