Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq302 178 2e-39 seq537 129 7e-25 >seq302 Length=64523 Score = 178 bits (196), Expect = 2e-39 Identities = 634/966 (66%), Gaps = 24/966 (2%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | ||||||||| || ||||||| |||||||||| || | ||||| ||||| || Sbjct 56217 TGGTATGCTATTCTCGAGGCTCAAACTGAGACTGGTAACCCCTTTATGCTCTACAAGGAT 56276 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 || || ||| | ||||| || |||||||| |||| || | || |||||||| || Sbjct 56277 GCTTGCAACAAGAAGAGCAACCAAAAGAACCTGGGGACTATTAGAAGCTCCAATCTATGC 56336 Query 105008 ACAGAAATCTTGGAATT-TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 105066 || || ||| | |||| | | || ||||| ||||| |||||| | || || || Sbjct 56337 ACCGAGATCATCGAATACTGCTCACCT-GATGAAGTTGCTGTTTGTAACTTGGCTTCCAT 56395 Query 105067 CGCTCTCCCCAAGTATGTGGATCCAGAGACAA-AGACATTTGATTATGAAAAACTCCACG 105125 || | || | | |||||| | | | ||| || ||||| || || ||||||| Sbjct 56396 TGCCTTACCTACCTTCGTGGATGCTGTGCGTGGAGA-ATATGATTTTGGCAAGCTCCACG 56454 Query 105126 AAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 105185 |||| || || ||| ||||| |||||| | || || |||| | || || | Sbjct 56455 AAGTAACTCAAGTCGTCGTTCGCAACCTTAACAGAATCATCGACCGAAACTACTATCCAG 56514 Query 105186 TTGAGACTGCTCGTA--AATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGG 105243 | ||| || | | || | || | | || || ||||||| |||||||||||| Sbjct 56515 TCGAGGAAGC-CAAACGAAGC-AACTTCCGCCATCGCCCAATTGCCTGCGGTGTTCAGGG 56572 Query 105244 TCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 ||| || |||| ||| | ||||| || | ||||||||||| ||||| ||| | Sbjct 56573 TCTTGCTGATGCTTTCCTCGCTTTG-CGACTTCCATTTGATTCCCCTGAAGCCAAGCAGT 56631 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTG 105361 | ||| | || ||||| || || || |||||| | |||| ||| | ||| | Sbjct 56632 TGAATATTCAAATTTTTGAAACAATTTACCACGCCTGT-TTGACTGCGTCCTGTGAGCTA 56690 Query 105362 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 105421 || ||||||| || |||||| | | ||| |||||||||| ||||| || | ||| Sbjct 56691 GCTAAGGTTGACGGCCCATATTCCTCATATGAAGGTTCTCCAGTCTCACAGGGCATCCTT 56750 Query 105422 CAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGA 105480 || | ||||||||||| || | || | | || || || ||||| |||| || | Sbjct 56751 CAGTATGATATGTGGG-GTGTCACTCCCACCGATCTCTGGGATTGGGATTCTCTGAAACA 56809 Query 105481 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTC 105540 ||| || | || | || |||||| | || | ||||| ||||| || ||| Sbjct 56810 GGAGATCGCTAAGCATGGAGTCCGCAACAGTTTGCTTGTTGCTCCCATGCCTACTGCCAG 56869 Query 105541 CAC-CGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 105599 ||| || | |||||| | || |||||||| ||||| ||||| | || ||||| Sbjct 56870 CACTAGCCAGATTCTTGGAT-TCAACGAATGCTTCGAACCTTACACCTCTAATATCTACT 56928 Query 105600 TGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCA 105659 | | | ||| || || ||||| ||||||||| | || || | ||||| Sbjct 56929 CGCGCCGTGTCCTTGCAGGCGAGTTCCAAATTGTCAACCCGTGGCTTTTGAAGGACCTGG 56988 Query 105660 AAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCA 105719 || | |||||||||||| | | |||||| ||| || | || || || |||| Sbjct 56989 TGGACTTGGGTCTCTGGTCCGACAACATGAAGAATCGAATTATTGCAGATGGAGGCTCCA 57048 Query 105720 TTCAAAATATTGTGGATATTCCAAATGAAAT-TAAGAAGTTGTACCGCACAGTTTGGGAA 105778 | ||||| ||| |||| ||| | || || ||| | || ||| || || |||||| Sbjct 57049 TCCAAAACATTCCCAATATCCCACAGGATATCAAAGCACTT-TACAAAACCGTCTGGGAA 57107 Query 105779 ATC---AAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAA 105835 ||| || ||| | | || | ||||| || ||||| ||| |||||| || ||| Sbjct 57108 ATCTCTCAG-CGAACCA--TTGTTCAGATGGCTGCCGATCGAGGTGCCTTCATCGACCAA 57164 Query 105836 AGTCAA 105841 |||| Sbjct 57165 TCTCAA 57170 Score = 120 bits (132), Expect = 4e-22 Identities = 402/620 (65%), Gaps = 13/620 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| ||||| | ||||| || || || || || || || || ||| | || || Sbjct 55487 CCCACAGCACATGATTATGCGTGTTGCTATTGGGATCCACGGAGATGACGTGGAAAGAGT 55546 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339 | | |||||||| || ||||| ||| ||| |||| ||| || | || ||||||| Sbjct 55547 CATTGAGACATATAACCTCATGTCGCAAAAGTAC-TTCACTCATGCCTCTCCTACCCTCT 55605 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || || || ||| || |||||||| || | | ||||| | Sbjct 55606 TCAACGCTGGTACTCCCCAGCCTCAGATGGCCTCGTGCTTCCTCATTGATATGAAGGAAG 55665 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | || || |||| || || | ||||| | ||| |||||| || | Sbjct 55666 ACAGCATCGAGGGCATTTATGACACCCTGAAAACTTGTGCTCTAATTTCAAAGACCGCCG 55725 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| | |||| || | | | | | || ||| || || | Sbjct 55726 GTGGTATTGGTCTTAACATTCACCGCATCCGTGGTACTGGTTCCTACATTGCTGGAACGA 55785 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 |||| ||| | || ||| |||| ||||| ||||| || || ||| || | || | Sbjct 55786 ATGGCTCTTCAAACGGAATTGTTCCTATGCTCCGCGTTTTCAATAACACTGCCAGATACG 55845 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | || ||| | | ||| | | || |||| ||||||||||||| Sbjct 55846 TCGACCAGGGAGGTAACAAGCGCCCA---GGAGCGTTTGCCATCTACCTTGAGCCATGGC 55902 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 | |||||| | || ||| | || | || ||||| || | || || | | || Sbjct 55903 ATATGGATATTTTTGAATTCTTGGATCTCCGGAAAAACCACGGCAAGGAAGAAGTTC-GT 55961 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || ||||| ||| || || |||| || ||||| || ||||| | |||||| || Sbjct 55962 GCTCGTGATCTATTCCTTGCACTTTGGACACCTGATCTATTTATGAAACGCGTTGAGAAG 56021 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | ||| | ||| |||| || |||||| | | ||||| || | | |||| | ||| Sbjct 56022 AATGGTGAATGGACTCTGTTCTGTCCAAATGAAGCACCAGGCTTGGCGGATGTCTATGGT 56081 Query 104813 GAGGAGTTTGAAGCCCTTTA 104832 || ||||| || || ||||| Sbjct 56082 GATGAGTTCGAGGCTCTTTA 56101 >seq537 Length=102077 Score = 129 bits (142), Expect = 7e-25 Identities = 156/207 (75%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 94791 ||||||| || || | || || || ||||||||||| ||| | || |||||| Sbjct 34758 CAGTTCCTTGCATCCGGAAAAAGGCTGATTGGGCTATCCGCTGGATCGAAGACAAAGAGT 34817 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | | ||||||| |||| ||| |||| ||||| ||| || |||||||||||| ||| Sbjct 34818 C-TACCTTTGCACAGCGTCTCGTCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGA 34876 Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||||| |||| | || | ||||| |||||||| || || |||||||| || ||| || Sbjct 34877 TCCTT-TGCGTCAATCTTCTGGCTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTC 34935 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| ||||||||||||||||| ||||| Sbjct 34936 CAATGAGCTTATCTCTCGTGATGAGGG 34962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250826240320