Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq302 159 4e-34 seq537 114 1e-20 seq559 93.3 5e-14 >seq302 Length=64523 Score = 159 bits (176), Expect = 4e-34 Identities = 392/589 (67%), Gaps = 4/589 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | || |||||||| || ||| | ||| |||||| || || Sbjct 55503 ATGCGTGTTGCTATTGGGATCCACGGAGATGACGTGGAAAGAGTCATTGAGACATATAAC 55562 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| ||||||||||| || || ||| | || ||||| |||||||||||||| Sbjct 55563 CTCATGTCGCAAAAGTACTTCACTCATGCCTCTCCTACCCTCTTCAACGCTGGTACTCCC 55622 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||||||||| | |||||||| | | |||||||| ||| ||||| ||||| Sbjct 55623 CAGCCTCAGATGGCCTCGTGCTTCCTCATTGATATGAAGGAAGACAGCATCGAGGGCATT 55682 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || || || || ||||| | || || ||| | |||||||| ||| | || Sbjct 55683 TATGACACCCTGAAAACTTGTGCTCTAATTTCAAAGACCGCCGGTGGTATTGGTCTTAAC 55742 Query 53435 -TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGG 53493 | | | | |||||| | || | || || ||||| ||| | | || Sbjct 55743 ATTCACCG-CATCCGTGGTACTGGTTCCTACATTGCTGGAACGAATGGCTCTTCAAACGG 55801 Query 53494 AATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGG 53553 ||| || |||||||||||||| ||||| ||||| ||| | |||||| ||||||| ||| Sbjct 55802 AATTGTTCCTATGCTCCGCGTTTTCAATAACACTGCCAGATACGTCGACCAGGGAGGTAA 55861 Query 53554 GAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTT 53613 |||||| || |||| ||||||||||| ||||| ||||| || ||| | || || Sbjct 55862 CAAGCGCCCAGGAGCGTTTGCCATCTACCTTGAGCCATGGCATATGGATATTTTTGAATT 55921 Query 53614 TCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAG 53672 | || || || || || || | ||||| | || ||| ||||| || || | Sbjct 55922 CTTGGATCTCCGGAAAAACCACGGCAAGGAAGAAGTTCG-TGCTCGTGATCTATTCCTTG 55980 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||| || || || || ||| || || |||||| | | || ||| ||| Sbjct 55981 CACTTTGGACACCTGATCTATTTATGAAACGCGTTGAGAAGAATGGTGAATGGACTCTGT 56040 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 | || || || || || ||| | || |||||| ||||| ||||| Sbjct 56041 TCTGTCCAAATGAAGCACCAGGCTTGGCGGATGTCTATGGTGATGAGTT 56089 >seq537 Length=102077 Score = 114 bits (126), Expect = 1e-20 Identities = 99/120 (83%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGG-CACA 74848 ||||| ||||| | |||||| |||||||| ||||||||||||| ||| ||||| | | || Sbjct 34941 TCATTGGAAAAGGTAAGGCCTGGCATAAGGCCACGCTTCTTCAGCCAGAAGATTGACGCA 34882 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||||| |||||||||||||| ||||||||| ||||||||||| || || || || || Sbjct 34881 -AAGGATCCACTGAAGAAGATACCTTCGACAGCAGCAAAGGCGACGAGACGCTGTGCAAA 34823 >seq559 Length=99345 Score = 93.3 bits (102), Expect = 5e-14 Identities = 199/292 (68%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 152779 AAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAG 152838 || |||||||| || |||||| |||| || ||||||||||| ||| | || ||| Sbjct 67155 AAACCCTTGATATGGCTACCGTCATGATCTTGATCAGTCATGATCATAAGATGCCCATAG 67096 Query 152839 CGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAG 152897 || ||| | | | ||| | ||| ||||| || || || || |||| ||||||| Sbjct 67095 CGGAGG-CCCTTCGTGTCAGTGTACTCCTTTTTGTGCTGTAGTCCAAGGAAGTTTTTGAT 67037 Query 152898 GTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGG 152957 ||| | |||| |||| | || | ||| | || | ||| ||||| || ||| || Sbjct 67036 GTTCTGGATTTCCGCATTTTTGGATATCTGATCGACAGAGGCGTCCCGGACGTTGAGCAT 66977 Query 152958 CTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTAC-AACGCTCAGACCGGCAA 153016 |||||| || || || |||||||| || | | || || | |||| ||||||| | Sbjct 66976 CTTTCCTCGAAGGGGGAACACGCCAAATAGATCAGGTCCAACTATTGCTC-GACCGGCCA 66918 Query 153017 TAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTG 153068 |||| | | || || || || ||||| || | ||| || ||||||| ||| Sbjct 66917 TAGCCAATCCCTTTGCGGAATCTCCCTCAGTAAGAATGAGAGTACAGTGGTG 66866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206642606400