Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq725 170 2e-37 seq639 131 2e-25 seq302 118 1e-21 seq1192 116 4e-21 seq537 113 5e-20 >seq725 Length=19491 Score = 170 bits (188), Expect = 2e-37 Identities = 178/232 (77%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || |||||||| |||||||| ||||| |||||| || | Sbjct 8626 ATGCAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAG--AGCT 8683 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| ||||| ||| | || ||||||| || || ||||| || || || || || | Sbjct 8684 CCGATACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATC 8743 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| |||||||| ||||||||||| || |||||||||| ||| || || | ||||| | Sbjct 8744 AGCAACGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACA 8803 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || |||| ||||| |||||| ||||| ||| || | | || ||||| || Sbjct 8804 ATATCCAGAAGGAGAGCACTCTCCATCTGGTCCTGAGATTGCGGGGTGGCCA 8855 Score = 167 bits (184), Expect = 3e-36 Identities = 176/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || ||||| ||||| || || ||||| || ||| || Sbjct 8397 AATGCAAATCTTCGTTAAAACCCTGACCGGAAAGACCATCACACTTGAAGTCGAG--AGT 8454 Query 27465 T--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| |||| ||| | || | |||||||| || || || || || || || || Sbjct 8455 TCAGATACGATTGACAATGTTAAATCAAAAATTCAAGATAAAGAAGGCATCCCCCCCGAT 8514 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || ||||| || || || ||||| ||||||| |||||| || | || ||| Sbjct 8515 CAGCAGCGCCTTATTTTCGCCGGAAAACAACTTGAGGATGGTCGTACTCTCTCGGATTAT 8574 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||||||||| |||||||||||||| ||| | ||||| || ||||| Sbjct 8575 AATATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCCGTGGTGG 8624 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||| || || ||||| ||||| || || || ||||| |||||| |||| ||| | Sbjct 8182 GTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCGAC 8241 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | ||||| || || || || || |||||||||||||||||||| ||||| Sbjct 8242 AACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAATC 8301 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||| | ||||||||| | || || ||| | || ||||| Sbjct 8302 TTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGGAG 8361 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||| | || | ||||| || || ||| Sbjct 8362 TCCACTCTTCACTTGGTTCTTCGTCTGCGTGGAGGA 8397 Score = 145 bits (160), Expect = 9e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||| |||||||| || || || |||||||| | ||||| || | | | | ||| Sbjct 7885 TTACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGT 7944 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | ||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || | Sbjct 7945 CCAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCA 8004 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| | ||||| | ||| ||||| | || ||||| | || ||||| || ||||| | Sbjct 8005 AGCAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCC 8064 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || | |||||||| || || Sbjct 8065 ACTTGGTTCTTCGTCTTCGTGGCGG 8089 >seq639 Length=25736 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||| ||||| | |||| ||| Sbjct 21994 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCAT 21935 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | ||||| |||||||||||||| || || || || |||||||| | Sbjct 21934 CGACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATT 21875 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| ||||| |||||||| | || || ||| || |||||| |||| || Sbjct 21874 GATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAA 21815 Query 27594 GG 27595 || Sbjct 21814 GG 21813 >seq302 Length=64523 Score = 118 bits (130), Expect = 1e-21 Identities = 290/433 (67%), Gaps = 14/433 (3%) Strand=Plus/Minus Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG---CCACCC 81384 || ||| |||||||||||| || || | ||| | || || ||| | || ||| Sbjct 55912 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 55853 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| |||||| | |||||| || || || || | |||||| | || || | ||| Sbjct 55852 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 55793 Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGC--TGATTGA-AAGA 81501 || ||||| || | || || || | | || | ||| ||| || |||| Sbjct 55792 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGA---TGCGGTGAATGTTAAGA 55736 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 || || ||||| | ||||||||| ||||||| |||| ||| |||||||| ||| Sbjct 55735 CCAATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCC 55676 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||||| |||| ||||| |||| | ||| || | ||||||||| | ||| Sbjct 55675 TCGATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGG--CTGGGGAG 55618 Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679 || || ||||| || || || | || ||| |||| || | ||||| |||| || Sbjct 55617 TACCAGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTAT 55558 Query 81680 AGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 | || || |||| | | | || || ||||| || || ||||| |||||||||| || Sbjct 55557 ATGTCTCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCA 55498 Query 81740 TGTACTG-GGGCG 81751 ||| ||| ||||| Sbjct 55497 TGTGCTGTGGGCG 55485 >seq1192 Length=144406 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||||||||| ||||| |||||||| ||||| || || || ||||| || |||||| Sbjct 8873 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 8814 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||| ||||| | ||||| || | || ||||| || || || || || ||| || Sbjct 8813 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 8754 Query 27619 CGTCTTCGCGGTGG 27632 |||||||| ||||| Sbjct 8753 CGTCTTCGTGGTGG 8740 >seq537 Length=102077 Score = 113 bits (124), Expect = 5e-20 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT-GA--ATCGTGGGTCGTCGTTTGGTCAGCGT 64719 ||||||||||| ||||| ||||| ||||| || | | ||| | |||| |||||| Sbjct 34775 AAAAAGGCTGATTGGGCTATCCGCTGGATCGAAGACAAAGAGTCTACCTTTGCACAGCGT 34834 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || ||||| ||| ||||| || ||||| ||| || || || || ||| Sbjct 34835 CTCGTCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTC 34894 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| ||||| |||||||| || | ||||| || ||||| |||||||| Sbjct 34895 TGGCTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGT 34954 Query 64840 GACGAGGG 64847 || ||||| Sbjct 34955 GATGAGGG 34962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300647692160