Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq302 239 6e-58 seq537 123 3e-23 >seq302 Length=64523 Score = 239 bits (264), Expect = 6e-58 Identities = 598/900 (66%), Gaps = 14/900 (2%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || || ||||| || | ||||| |||| || || ||||||||| || | || | | Sbjct 56092 TCGAACTCATCACCATAGACATCCGCCAAGCCTGGTGCTTCATTTGGACAGAACAGAGTC 56033 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || ||||||| | || ||| ||||||||||| ||||||||| |||| || |||| ||| Sbjct 56032 CATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAAT 55973 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| || | | | |||||| || || || || ||||| | || || | | Sbjct 55972 AGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAA 55913 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||| ||||||||| || || || || || | |||| || || || ||||||||| Sbjct 55912 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 55853 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | |||||||| |||||||| |||| | | ||| |||| ||| ||||| || Sbjct 55852 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 55793 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 | ||||| ||||||| ||| || ||| | | || || |||| | || Sbjct 55792 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCA 55733 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || || || || |||| || |||||||| ||| ||||| || || || || ||||| Sbjct 55732 ATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCG 55673 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 || ||||| ||| |||| | || || || || | ||| ||| | || ||| || Sbjct 55672 ATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCA 55613 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 || || || | || ||||| ||||| || || | |||| || | || || ||||| Sbjct 55612 GCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTC 55553 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 ||||| || ||| | ||| | || || || | || |||||||| | ||| ||| Sbjct 55552 TCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGC 55493 Query 78525 TGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 78584 || || | || | ||| ||| ||| | |||||| || | |||| || || Sbjct 55492 TGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTG 55433 Query 78585 AAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 || || ||||| | ||| ||||| | ||||||| |||| | || || | | ||| Sbjct 55432 AATCCGAAATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAACTCATCC 55373 Query 78645 TTGTATTTGGTAACAATATCCATGACAGTAGT---TGAAATAATAGG---AGATCGTACA 78698 | | | | || || | ||| || ||| | ||| || || || || ||| Sbjct 55372 GCATGTCTCATTACGAT-TTCAT-AC-GTACTCTGTGATATCATGGGGGCAGGACGT--- 55319 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTA-AATAGtttttt 78757 || || || ||||| |||| | | ||| || || || || | ||| | || || Sbjct 55318 CCGTTCTTGGGATTGTGGTAGTGGTACAGATCATCTATCAC-GGACGAGAATTGCTTCTT 55260 Query 78758 tGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 |||| |||||| || || |||||||| || | ||||||||||| || || || ||||| Sbjct 55259 GGTTTGCTTGTGAAGGTTGGATACAGCAATCCGAGCAGCTAGAATTGCGTAGTCTGGATG 55200 Score = 187 bits (206), Expect = 3e-42 Identities = 711/1106 (64%), Gaps = 34/1106 (3%) Strand=Plus/Minus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||||| || ||||| ||||||| ||| |||| ||||||| ||||| ||||| Sbjct 57317 TTCTTGATCCACAGTGAACTGGATTGGAGCAGACGCGGCCATTGTACGGAGATAATACAT 57258 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 ||||| || | || || |||| ||| ||| |||||||| || | || | | Sbjct 57257 GCCAGTCTTCAAGCCGAGTTTCCAGCCGGTGAAGTGCATGCTGGTAATCTT-----ACCC 57203 Query 76889 AGGATCGGCT-----ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTA 76943 | | | |||| | |||||||| | || ||| ||| |||||||| || |||| | Sbjct 57202 ATGGTGGGCTCCTTCAAGTGAATATTGAGAGATTGAGATTGGTCGATGAAGGCACCTCGA 57143 Query 76944 TCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGT 77003 || || ||||| | | |||||| |||| |||||||| | |||||| ||| | | Sbjct 57142 TCGGCAGCCATCTGAACAATGGTTCGCTGAGAGATTTCCCAGACGGTTTTGTAAAGTGCT 57083 Query 77004 TTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTA 77060 |||||||| | ||| | || | | ||||| ||||| || ||||||| |||||| | Sbjct 57082 TTGATATCCTGTGGGATATTGGGAATGTTTTGGATGGAGCCTCCATCTGCAATAATTCGA 57023 Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || | || ||| | | || | | | | || || || Sbjct 57022 TTCTTCATGTTGTCGGACCAGAGACCCAAGTCCACCAGGTCCTTCAAAAGCCACGGGTTG 56963 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || ||||| || || || | | || | || | ||| |||||| ||| || ||||| Sbjct 56962 ACAATTTGGAACTCGCCTGCAAGGACACGGCGCGAGTAGATATTAGAGGTGTAAGGTTCG 56903 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | |||| ||| ||| | ||| || ||| ||||| ||||| || || || | Sbjct 56902 AAGCATTCGTTGAATCCAAGAATCTGGCTAGTGCTGGCAGTAGGCATGGGAGCAACAAGC 56843 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 ||||| || | || ||||| | ||| | | ||| ||| | | ||||||||| ||| Sbjct 56842 AAACTGTTGCGGACTCCATGCTTAGCGATCTCCTGTTTCAGAGAATCCCAATCCCAGAGA 56783 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTT----ACTAGCATATGA 77356 || | || ||| |||| | ||| || || || || || | ||| | || Sbjct 56782 TCGGTGGGAGTGACACCCCACATATCATACTGAAGGATGCCCTGTGAGACTGGA----GA 56727 Query 77357 TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 || | ||||| ||| || || || | |||||| ||||| ||| ||| Sbjct 56726 ACCTTCATATGAGGAATATGGGCCGTCAACCTTAGCTAGCTCACAGGACGCAGTCAAACA 56667 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAA 77475 ||| ||||||||||| ||||| | |||| | | |||| |||||| ||||| Sbjct 56666 GGCGTGGTAAATTGTTTCAAAAATTTGAATATTCAACTGCTTG-GCTTCAGGGGAATCAA 56608 Query 77476 ACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTC 77535 | ||| | ||| | || ||||| || | |||||||| || |||| || | Sbjct 56607 ATGGAAGTCGCAAAGCGAGGAAAGCATCAGCAAGACCCTGAACACCGCAGGCAATTGGGC 56548 Query 77536 TATGTCTCTTATTGGAAATTTTAGCTTC-TGGAATAGGATAATAATTAATGTCTATAATT 77594 ||| | ||| ||| ||||| | || | ||||| || || ||| || ||| Sbjct 56547 GATGGCGGAAGTTGCTTCGTTTGGCTTCCTCGACT-GGATAGTAGTTTCGGTCGATGATT 56489 Query 77595 TTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 | || || || | ||| || |||| | || || | || || ||||||| || | Sbjct 56488 CTGTTAAGGTTGCGAACGACGACTTGAGTTACTTCGTGGAGCTTGCCAAAATCATATTCT 56429 Query 77655 CCATCTATAACAAACATGTTC------AAAGCTATAGATGCTAGATTACAAACTGCTACC 77708 ||| | | || || | || || || || || | |||||||| || || Sbjct 56428 CCACGCACAGCATCCACGAAGGTAGGTAAGGCAATGGAAGCCAAGTTACAAACAGCAACT 56369 Query 77709 TCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCC 77767 |||| || || ||| |||| || |||||||| |||||||| | | | ||||| || Sbjct 56368 TCATCAG-GTGAGCAGTATTCGATGATCTCGGTGCATAGATTGGAGCTTCTAATAGTCCC 56310 Query 77768 CAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCC 77827 ||| || | |||||||||||| || ||||| | ||||| || || ||||| || | || Sbjct 56309 CAGGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACC 56250 Query 77828 GGTTTCAATCTGTGATTCGATAATAG 77853 || ||| | || | |||| ||||| Sbjct 56249 AGTCTCAGTTTGAGCCTCGAGAATAG 56224 >seq537 Length=102077 Score = 123 bits (136), Expect = 3e-23 Identities = 196/278 (71%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 |||||||||| || ||||| || ||||| || ||||| || |||| || || | || Sbjct 34630 TTTCGGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCAGGGA 34571 Query 48496 TCTGTAC--CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 ||| || ||||| ||| || || | | |||||||| || |||||||| || Sbjct 34570 CCTGGACTTCTCCGCTGAAA--CGCTCGACGAGGTTCTCATTGACAATTCCATCCGACGC 34513 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT--- 48610 || || ||||| || || ||| || || ||| |||| | ||| | |||| Sbjct 34512 GGCGAAGAATGCCAAGACGTGTGAGATGAAGTATCGCTCGTCATCATTCAATCTATTGTT 34453 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||||| | |||||| || | ||| |||||||| || |||||||| ||||||||||| Sbjct 34452 CCAGTCATGAAGATCTTTCGAGAGATCAACTTCTTCTGCGGTCCAAAACGATGCCTCTGC 34393 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTG 48708 ||| || ||||| | ||| || |||| ||| |||| Sbjct 34392 TTTCTTGTACATTTGCCAGAT----CTGTGTTGAATTG 34359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656921163520