Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq302 284 2e-71 seq537 116 5e-21 >seq302 Length=64523 Score = 284 bits (314), Expect = 2e-71 Identities = 602/895 (67%), Gaps = 4/895 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || || ||||| || | ||||| |||| || || |||||| ||||| | || | | Sbjct 56092 TCGAACTCATCACCATAGACATCCGCCAAGCCTGGTGCTTCATTTGGACAGAACAGAGTC 56033 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || ||||||| | || ||| ||||||||||| ||||||||| |||| || |||| ||| Sbjct 56032 CATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAAT 55973 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| || | | | |||||| || || || || ||||| | ||| || | | Sbjct 55972 AGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAA 55913 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||| ||||||||| || || || || || | | || || || || ||||||||| Sbjct 55912 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 55853 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | ||||||||||||||||| |||| | | ||| |||| ||| ||||| || Sbjct 55852 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 55793 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 | ||||| ||||||| ||| || ||| |||| || ||| || || Sbjct 55792 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCA 55733 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || || || || | || || ||||||||||| ||||| |||||||| |||||||| Sbjct 55732 ATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCG 55673 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 || || || ||| |||| | || || || || | ||| ||| | || ||| || Sbjct 55672 ATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCA 55613 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 || || || | |||||||| ||||||||||| | |||| || | || || ||||| Sbjct 55612 GCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTC 55553 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 ||||| ||| ||| | || | || || || | ||| |||||||| | ||| ||| Sbjct 55552 TCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGC 55493 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || || || ||| || ||| ||| ||| | |||||| || | |||| || || Sbjct 55492 TGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTG 55433 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCC 77239 || || ||||| | ||| ||||| | ||||||| |||| | || || | | ||| Sbjct 55432 AATCCGAAATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAACTCATCC 55373 Query 77240 TTATATTTGGTAACAATATCCATGAC--AGTGGTAGAAATAATTGGAGATCGTATTCCAT 77297 || | | | || || | ||| || | | || || || || | | ||| | Sbjct 55372 GCATGTCTCATTACGAT-TTCAT-ACGTACTCTGTGATATCATGGGGGCAGGACGTCCGT 55315 Query 77298 TTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTT 77357 | || ||||| |||| | | || || || ||| ||| | || || |||| Sbjct 55314 TCTTGGGATTGTGGTAGTGGTACAGATCATCTATCACGGACGAGAATTGCTTCTTGGTTT 55255 Query 77358 CCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 |||||| || || ||||| || || | ||||||||||||||| ||||| ||||| Sbjct 55254 GCTTGTGAAGGTTGGATACAGCAATCCGAGCAGCTAGAATTGCGTAGTCTGGATG 55200 >seq537 Length=102077 Score = 116 bits (128), Expect = 5e-21 Identities = 204/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 || || | ||| ||||| || | ||| || |||| || || |||||||| || Sbjct 34664 TCCTTGATATACGTATCGATGAGAAGGGAGTAAGTTTCGGAGTGGATGTTTTCCATCATG 34605 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 ||||| || ||||| || |||| || |||| | ||| || ||| | || || || Sbjct 34604 ATCTGGAAACCGTAGAAGCATCGGGCCTCAGGGACCTGGACTTCTCCGCTGAAACGCTC- 34546 Query 47011 GACAAA-TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||| | |||||||| || |||||||| || || || |||||||| || ||| || Sbjct 34545 GACGAGGTTCTCATTGACAATTCCATCCGACGCGGCGAAGAATGCCAAGACGTGTGAGAT 34486 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATC 47126 || ||| || || | ||| | |||| |||||||| | |||||| || | ||| Sbjct 34485 GAAGTATCGCTCGTCATCATTCAATCTATTGTTCCAGTCATGAAGATCTTTCGAGAGATC 34426 Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 |||||||| || ||||| || || ||||||||||| || ||||| | ||| || Sbjct 34425 AACTTCTTCTGCGGTCCAAAACGATGCCTCTGCTTTCTTGTACATTTGCCAGAT 34372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712922208821760