Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713645.1_20201 6-08-25] 1,368 sequences; 29,399,910 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq725 156 1e-32 seq639 102 2e-16 seq1192 87.8 4e-12 >seq725 Length=19491 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| || ||||| || || || || || ||||| Sbjct 8401 CAAATCTTCGTTAAAACCCTGACCGGAAAGACCATCACACTTGAAGTCGAGAGTTCAGAT 8460 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || |||||||| ||||| || || ||||| Sbjct 8461 ACGATTGACAATGTTAAATCAAAAATTCAAGATAAAGAAGGCATCCCCCCCGATCAGCAG 8520 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| |||||||||||||| || || ||||| | ||||| | |||||||| || Sbjct 8521 CGCCTTATTTTCGCCGGAAAACAACTTGAGGATGGTCGTACTCTCTCGGATTATAATATC 8580 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || ||||| || Sbjct 8581 CAAAAGGAGTCCACTCTTCATCTCGT 8606 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || || ||||| || || || || || || ||||| || Sbjct 8629 CAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAGAGCTCCGAT 8688 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || || || || || ||||| ||||| ||||| |||||| Sbjct 8689 ACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAGCAA 8748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||||||||| ||||| |||||||| | || || || || Sbjct 8749 CGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACAATATC 8808 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || ||||| || ||||| Sbjct 8809 CAGAAGGAGAGCACTCTCCATCTGGTCCTGAGA 8841 Score = 129 bits (142), Expect = 1e-24 Identities = 150/201 (75%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| ||||||||||| || || || |||||||| |||||||| || || ||||||| Sbjct 8180 TCGTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCG 8239 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || || || || || |||||||| || ||||| |||||||| || || | Sbjct 8240 ACAACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAA 8299 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||||||||| || ||||| || || || | || ||| | ||||| || | || || | Sbjct 8300 TCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGG 8359 Query 178111 AATCAACACTGCATCTTGTTT 178131 | || || || || |||| || Sbjct 8360 AGTCCACTCTTCA-CTTGGTT 8379 Score = 104 bits (114), Expect = 6e-17 Identities = 136/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || || |||||||| || || || || ||||| | ||||| Sbjct 7887 ACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGTCC 7946 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||||||||| ||||| || ||||| ||||||||||| || || |||||||| || Sbjct 7947 AAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCAAG 8006 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | || || || | || ||| | ||||||||| | || || || ||||| || || Sbjct 8007 CAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCCA- 8065 Query 178125 CTTGTTT 178131 |||| || Sbjct 8066 CTTGGTT 8072 >seq639 Length=25736 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| || | || |||||| Sbjct 21993 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATC 21934 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || || || |||||||| || || ||||| || || ||||| ||| | Sbjct 21933 GACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATTG 21874 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| || || | || || |||||||| |||| || Sbjct 21873 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAA 21815 >seq1192 Length=144406 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || ||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct 8873 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 8814 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | || || | || || ||| | || || || || || || || || || Sbjct 8813 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGT 8758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203710101601392