Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq326 136 4e-27
seq257 105 7e-18
seq12 104 2e-17
seq246 100 3e-16
>seq326
Length=563541
Score = 136 bits (150), Expect = 4e-27
Identities = 203/285 (71%), Gaps = 5/285 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| || || ||||| ||||| ||||||| || || || || ||
Sbjct 320694 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 320635
Query 116696 TCCAAGGACACGAGCGACTGGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || |||||| | | ||||| || ||||||| | ||||||
Sbjct 320634 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 320575
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| |||| || |||||||| || || || ||||| ||||| || |||||||||
Sbjct 320574 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCGT 320515
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || || || | ||||| | ||||| || ||||||||||| || |||||| ||
Sbjct 320514 TTCAGCGGAGAAG-TCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGAT 320456
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
||| ||| | ||||| |||| || || |||||||| |||||
Sbjct 320455 GGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTA 320411
Score = 129 bits (142), Expect = 6e-25
Identities = 303/451 (67%), Gaps = 10/451 (2%)
Strand=Plus/Minus
Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043
||||| || ||||| | |||||||||| | || |||| | |||| | |||| ||
Sbjct 320288 AAGGCTGATTGGGCTATCCGCTGGATCGAAGACAAAGAGTCTACCTTTGCACAGCGTCTC 320229
Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103
|| ||||| || || ||||| || ||||||| || || || | || || |||
Sbjct 320228 GTCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGG 320169
Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163
|| ||||| || ||||| ||||| ||||| || || ||| ||||| ||||| | ||
Sbjct 320168 CTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGAT 320109
Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223
|||||| | || ||||| ||||| | || ||| || || || || || |||
Sbjct 320108 GAGGGTTTACACACTGACTTCGCCTGCCTTCTCTTCTCTCACCTGCGCCACCGCCCCAGC 320049
Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283
| | | || | | ||| |||| || || ||||||||||||||| ||||||||
Sbjct 320048 CCAGAGGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCACA 319989
Query 117284 GAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCG 117341
|| || || || |||| || || ||| | || || || | |||| ||||||||||
Sbjct 319988 GATGCTCT-CCCATGCGCACTTCTCGGAATGAA-CGCCAAGCTCATGTGCCAATACATCG 319931
Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGC 117398
|||| || || || | || || | | ||| ||| ||| | ||||||| |
Sbjct 319930 AGTTTGTTGCTGATCGACTCCTCGTTGCTCTG---GGCAATAAGAAAGTCTACAACTCTA 319874
Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTC 117429
||||||| | || || ||| || ||||||
Sbjct 319873 CCAACCCATTCGATTTCATGGACAACATCTC 319843
>seq257
Length=236519
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| |||| ||||| ||| ||| | | |
Sbjct 59186 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATC 59127
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | | ||| ||||| | ||||| ||||| ||||| | || ||||| ||| |
Sbjct 59126 GACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATTG 59067
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| || || || | || || || |||||||||
Sbjct 59066 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAAG 59007
Query 40879 G 40879
|
Sbjct 59006 G 59006
>seq12
Length=85050
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| ||||| | ||||||||||| || |||| ||| || |||||||| ||
Sbjct 76079 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 76138
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||||||| ||||||||||| ||||||||| | || || || || || ||
Sbjct 76139 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 76198
Query 40903 CG 40904
||
Sbjct 76199 CG 76200
>seq246
Length=239075
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| || || |||||||| || || | || || || | ||
Sbjct 189417 ATGCAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAGAGCTCC 189358
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | || ||||| | || || || || ||||| |||| |||
Sbjct 189357 GATACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 189298
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| || || |||||||| || || | || || || ||||||||
Sbjct 189297 CAACGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACAAT 189238
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| ||| || ||||| || || | ||| |||| |||
Sbjct 189237 ATCCAGAAGGAGAGCACTCTCCATCTGGTCCTGAGATTGCGGGGTGGC 189190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216681866160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |