Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq279 205 8e-48 seq326 132 4e-26 seq246 95.1 1e-14 >seq279 Length=233879 Score = 205 bits (226), Expect = 8e-48 Identities = 435/646 (67%), Gaps = 10/646 (2%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||||||| ||||||| ||||| ||| |||| || || ||| || || || || Sbjct 179873 TTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAATAGATCACGAGCA 179932 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || || || || |||||| ||| || | |||||| || || || | ||| |||| Sbjct 179933 CGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAAATATCCATATGC 179992 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||||||| || || | ||| || || ||||| |||||||| Sbjct 179993 CATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCCTGGTCGACGTAT 180052 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | ||| ||||| ||| | || | ||||| || || | ||||| || | ||| | || Sbjct 180053 CTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAAGAGCCA--TTCG 180110 Query 23579 --CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636 || || | ||||| | | || | | ||||| || | ||| || || ||| Sbjct 180111 TTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCAATACCACCGG 180170 Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 | | || || || | || || |||||| ||||| || ||||||||||||||||| | Sbjct 180171 CGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCGATGCTGTCTT 180230 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756 | || | | | | ||| ||||| | ||| || | | ||| ||| | || ||| | Sbjct 180231 CCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCAGCGTTGAAGA 180290 Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816 | || || ||| || || ||||| | |||||| || || || || || ||| | Sbjct 180291 GGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTCTCAATGACTC 180350 Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876 || | ||| |||||||| || || || || || ||||| ||||||| || || | || Sbjct 180351 TTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGCTGTGGGCGCT 180410 Query 23877 ---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAA 23933 | ||| | ||| || ||| | || || || | | || || || ||||| | Sbjct 180411 CTGCAACCTT---GCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTGAATCCGA 180467 Query 23934 AATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 |||| | ||||| ||||| ||||||| || || || || || || Sbjct 180468 AATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAA 180513 >seq326 Length=563541 Score = 132 bits (146), Expect = 4e-26 Identities = 208/295 (71%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| || ||||| |||||||||||||||| |||||||| || || Sbjct 320694 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 320635 Query 57630 TCTAAGGATCTGAGCGATTGGGA---TTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||||| || ||| | | | || || ||| || | || || | Sbjct 320634 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 320575 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || |||||||| || ||||| ||||| || ||||| | ||||| | Sbjct 320574 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCG- 320516 Query 57747 TTTTCACA--AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| |||||| || || | ||||| ||||||| ||||| || || | | Sbjct 320515 -TTTCAGCGGAGAAGTCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGA 320457 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | |||||| | || || |||| || || || |||||||||||||| | ||||| Sbjct 320456 TGGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTATATCAAGGA 320402 Score = 113 bits (124), Expect = 4e-20 Identities = 217/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| || || || ||||||||||| ||||| || ||||||| |||| || ||| Sbjct 320227 TCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGGC 320168 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| || ||||| ||||| ||||| || ||| ||| ||| | || || || || | Sbjct 320167 TGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGATG 320108 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||| | || ||||| || || ||||| | | ||||||| | | | || | | Sbjct 320107 AGGGTTTACACACTGACTTCGCCTGCCTTCTCTTCTCTCACCTGCGCCACCGCCCCAGCC 320048 Query 58159 GGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 || | | || | | || ||||| || || ||||| ||||| | ||||| |||| Sbjct 320047 CAGA--GGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCAC 319990 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || || || || || | ||||| |||||| | | |||| | ||||| || Sbjct 319989 AGATGCTCTCCCATGCGCACTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGA 319930 Query 58277 GTTTGTTGCCGACAGACT 58294 ||||||||| || |||| Sbjct 319929 GTTTGTTGCTGATCGACT 319912 >seq246 Length=239075 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| || ||||| || || || || |||||| | || || || | ||||| | ||| Sbjct 189863 TCGTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCG 189804 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | || || || |||| || || |||||| | || || ||||||||||| |||| Sbjct 189803 ACAACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAA 189744 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| ||||| ||| |||| ||| | || | ||||| || ||||| || | Sbjct 189743 TCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGG 189684 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || |||||||| |||| ||| | ||| | || || Sbjct 189683 AGTCCACTCTTCACTTGGTTCTTCGTCTGCGTGGAGG 189647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || || || || ||| |||| ||||| || || | |||| | ||||| Sbjct 190157 ACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGTCC 190098 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | ||| |||||||||||| | || || |||||||| ||||| || ||||| ||||| Sbjct 190097 AAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCAAG 190038 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 |||||||| ||| | || | |||||||||||||| || || || ||||| || Sbjct 190037 CAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCCAC 189978 Query 31397 CTGGTACTTAGACTGAGGGGCGG 31419 |||| ||| | || | ||||| Sbjct 189977 TTGGTTCTTCGTCTTCGTGGCGG 189955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764221316720