Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq279 205 8e-48
seq326 132 4e-26
seq246 95.1 1e-14
>seq279
Length=233879
Score = 205 bits (226), Expect = 8e-48
Identities = 435/646 (67%), Gaps = 10/646 (2%)
Strand=Plus/Plus
Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398
|| ||||||||| ||||||| ||||| ||| |||| || || ||| || || || ||
Sbjct 179873 TTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAATAGATCACGAGCA 179932
Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458
|| || || || |||||| ||| || | |||||| || || || | ||| ||||
Sbjct 179933 CGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAAATATCCATATGC 179992
Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518
|| ||||| ||||| | ||||||||| || || | ||| || || ||||| ||||||||
Sbjct 179993 CATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCCTGGTCGACGTAT 180052
Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578
| ||| ||||| ||| | || | ||||| || || | ||||| || | ||| | ||
Sbjct 180053 CTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAAGAGCCA--TTCG 180110
Query 23579 --CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636
|| || | ||||| | | || | | ||||| || | ||| || || |||
Sbjct 180111 TTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCAATACCACCGG 180170
Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696
| | || || || | || || |||||| ||||| || ||||||||||||||||| |
Sbjct 180171 CGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCGATGCTGTCTT 180230
Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756
| || | | | | ||| ||||| | ||| || | | ||| ||| | || ||| |
Sbjct 180231 CCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCAGCGTTGAAGA 180290
Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816
| || || ||| || || ||||| | |||||| || || || || || ||| |
Sbjct 180291 GGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTCTCAATGACTC 180350
Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876
|| | ||| |||||||| || || || || || ||||| ||||||| || || | ||
Sbjct 180351 TTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGCTGTGGGCGCT 180410
Query 23877 ---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAA 23933
| ||| | ||| || ||| | || || || | | || || || ||||| |
Sbjct 180411 CTGCAACCTT---GCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTGAATCCGA 180467
Query 23934 AATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
|||| | ||||| ||||| ||||||| || || || || || ||
Sbjct 180468 AATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAA 180513
>seq326
Length=563541
Score = 132 bits (146), Expect = 4e-26
Identities = 208/295 (71%), Gaps = 7/295 (2%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| || ||||| |||||||||||||||| |||||||| || ||
Sbjct 320694 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 320635
Query 57630 TCTAAGGATCTGAGCGATTGGGA---TTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || ||||| || ||| | | | || || ||| || | || || |
Sbjct 320634 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 320575
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| ||||| || |||||||| || ||||| ||||| || ||||| | ||||| |
Sbjct 320574 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCG- 320516
Query 57747 TTTTCACA--AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
||||| |||||| || || | ||||| ||||||| ||||| || || | |
Sbjct 320515 -TTTCAGCGGAGAAGTCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGA 320457
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
| |||||| | || || |||| || || || |||||||||||||| | |||||
Sbjct 320456 TGGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTATATCAAGGA 320402
Score = 113 bits (124), Expect = 4e-20
Identities = 217/318 (68%), Gaps = 4/318 (1%)
Strand=Plus/Minus
Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038
|||| || || || ||||||||||| ||||| || ||||||| |||| || |||
Sbjct 320227 TCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGGC 320168
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
||||||| || ||||| ||||| ||||| || ||| ||| ||| | || || || || |
Sbjct 320167 TGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGATG 320108
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158
||||| | || ||||| || || ||||| | | ||||||| | | | || | |
Sbjct 320107 AGGGTTTACACACTGACTTCGCCTGCCTTCTCTTCTCTCACCTGCGCCACCGCCCCAGCC 320048
Query 58159 GGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216
|| | | || | | || ||||| || || ||||| ||||| | ||||| ||||
Sbjct 320047 CAGA--GGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCAC 319990
Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276
|| || || || || | ||||| |||||| | | |||| | ||||| ||
Sbjct 319989 AGATGCTCTCCCATGCGCACTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGA 319930
Query 58277 GTTTGTTGCCGACAGACT 58294
||||||||| || ||||
Sbjct 319929 GTTTGTTGCTGATCGACT 319912
>seq246
Length=239075
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| || ||||| || || || || |||||| | || || || | ||||| | |||
Sbjct 189863 TCGTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCG 189804
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | || || || |||| || || |||||| | || || ||||||||||| ||||
Sbjct 189803 ACAACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAA 189744
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| ||||| ||||| ||| |||| ||| | || | ||||| || ||||| || |
Sbjct 189743 TCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGG 189684
Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
| || |||||||| |||| ||| | ||| | || ||
Sbjct 189683 AGTCCACTCTTCACTTGGTTCTTCGTCTGCGTGGAGG 189647
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| || || || || ||| |||| ||||| || || | |||| | |||||
Sbjct 190157 ACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGTCC 190098
Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336
| ||| |||||||||||| | || || |||||||| ||||| || ||||| |||||
Sbjct 190097 AAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCAAG 190038
Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396
|||||||| ||| | || | |||||||||||||| || || || ||||| ||
Sbjct 190037 CAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCCAC 189978
Query 31397 CTGGTACTTAGACTGAGGGGCGG 31419
|||| ||| | || | |||||
Sbjct 189977 TTGGTTCTTCGTCTTCGTGGCGG 189955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764221316720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |