Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq246 104 2e-17
seq12 84.2 2e-11
>seq246
Length=239075
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| |||||||||||||||||| |||| |||||||||||||| || || || ||||| ||
Sbjct 189263 TCCTCGAGCTGTTTACCAGCAAAGATTAGACGTTGCTGATCCGGTGGGATACCTTCCTTA 189322
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| |||||| ||| | | || | || |||| | ||| || |||| || |
Sbjct 189323 TCTTGGATTTTAGATTTAACATTATCAATGGTATCGGAGCTCTCAACTTCAAGCGTAATA 189382
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| |||||||||| ||||| ||||| ||||||||
Sbjct 189383 GTTTTGCCGGTCAGGGTTTTAACGAAGATTTGCAT 189417
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| ||||| || |||||||| | || | || || || |||
Sbjct 189443 TGAAGAGTGGACTCCTTTTGGATATTATAATCCGAGAGAGTACGACCATCCTCAAGTTGT 189502
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || | || || || ||||||||||| || ||||||||||| || ||| ||||
Sbjct 189503 TTTCCGGCGAAAATAAGGCGCTGCTGATCGGGGGGGATGCCTTCTTTATC-TTGAATTTT 189561
Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| |||| | | || | || || | ||| || |||| || | ||||| |||||
Sbjct 189562 TGATTTAACATTGTCAATCGTATCTGAACTCTCGACTTCAAGTGTGATGGTCTTTCCGGT 189621
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| ||||| ||||| ||||||||
Sbjct 189622 CAGGGTTTTAACGAAGATTTGCAT 189645
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| ||||||| || ||||| || ||||| || |||||
Sbjct 189647 CCTCCACGCAGACGAAGAACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGAA 189706
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||| || ||||| || || || |||| || || ||||| || |||||
Sbjct 189707 AGGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCTGGAGGA 189766
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||||||||| || || |||| | ||| | | || | || |||| | ||||||
Sbjct 189767 ATGCCTTCTTTATC-TTGTATTTTCGACTTAACGTTGTCGATGGTATCGGATGACTCCAC 189825
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754
||| | ||| | ||||| ||||| | ||||| ||||
Sbjct 189826 CTCTAGGGTGATGGTCTTACCGGTGAGAGTTTTGACGA 189863
Score = 82.4 bits (90), Expect = 8e-11
Identities = 106/145 (73%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | ||| | ||| ||||| | || ||||| || ||||||||||||||
Sbjct 189954 GCCGCCACGAAGACGAAGAACCAAGTGGAGAGTTGACTCCTTCTGAATGTTATAATCAGA 190013
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| ||| || | ||| || || || | |||||||||||||| || |||||
Sbjct 190014 AAGGGTGCGACCGTCCTCCAACTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCAGGAGG 190073
Query 139657 TATGCCTTCTTTGTCGGTGATTTTT 139681
|| ||||| ||||| ||| ||||
Sbjct 190074 AATCCCTTCCTTGTC-CTGAATTTT 190097
>seq12
Length=85050
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || | ||| | || ||||| || |||||||| || ||
Sbjct 76212 CCACCACGAAGACGCAGGACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAG 76153
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| |||||||||||||| || |||||||||||||||| ||||||||
Sbjct 76152 AGGGTGCGACCGTCCTCGAGCTGTTTACCGGCGAAGATCAGACGTTGCTGGTCGGGAGGG 76093
Query 139658 ATGCCTTCTTTGTC 139671
|| || || |||||
Sbjct 76092 ATTCCCTCCTTGTC 76079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496061575487200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |