Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq326 132 5e-26 seq246 98.7 1e-15 seq257 96.9 3e-15 seq12 91.5 1e-13 >seq326 Length=563541 Score = 132 bits (146), Expect = 5e-26 Identities = 323/483 (67%), Gaps = 10/483 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || ||||| ||||| || || ||| ||| ||||| || |||||| Sbjct 319813 TTCTCAAAGAAGTTAGTCTTTCCAGTCAGCGAGATGTTGTCCATGAAATCGAATGGGTTG 319872 Query 132685 GCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||||| | ||| |||| ||| | ||||| || | || || || ||| Sbjct 319873 GTAGAGTTGTAGACTTTCTTATTGCC---CAGAGCAACGAGGAGTCGATCAGCAACAAAC 319929 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799 ||||||||||| ||||| | || || || | ||| || || |||| || || || | Sbjct 319930 TCGATGTATTGGCACATGAGCTTGGCG-TTCATTCCGAGAAGTGCGCATGGG-AGAGCAT 319987 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | ||||| || |||||||||||||| || || |||| ||||| | ||| | | | Sbjct 319988 CTGTGAGGAACTCCTGCTCGATGGCGACAGCTTCTGTGATGATTTTCTGAACAGCCTCTG 320047 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| || || || || || ||| | | ||| || ||||| || || |||| Sbjct 320048 GGCTGGGGCGGTGGCGCAGGTGAGAGAAGAGAAGGCAGGCGAAGTCAGTGTGTAAACCCT 320107 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || | || || || || ||| || || | ||| ||||| ||||| || || || | Sbjct 320108 CATCACGAGAGATAAGCTCATTGGAAAAGGTAAGGCCTGGCATAAGGCCACGCTTCTTCA 320167 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || || | || || || ||||||| || ||||| || || || || | Sbjct 320168 GCCAGAAGATTGACGCAAAGGATCCACTGAAGAAGATACCTTCGACAGCAGCAAAGGCGA 320227 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 | || |||| | || || | |||||| |||||||||| | ||||| || |||| Sbjct 320228 CGAGACGCTGTGCAAAGGTAGACTCTTTGTCTTCGATCCAGCGGATAGCCCAATCAGCCT 320287 Query 133100 TTT 133102 ||| Sbjct 320288 TTT 320290 Score = 129 bits (142), Expect = 6e-25 Identities = 194/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || || |||||||| || || |||| ||||| | ||| ||||| ||| || || Sbjct 320411 TACGTATCGATGAGAAGGGAGTAAGTTTCGGAGTGGATGTTTTCCATCATGATCTGGAAA 320470 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || ||||| ||||| |||||| |||||||||||| || || Sbjct 320471 CCGTAGAAGCATCGGGCCTCAGGGACCTGGACTTCTCCGCTGAAACGCTCGACGAGGTTC 320530 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 || ||||| || || || |||||||| || |||| ||||| |||||| | ||| Sbjct 320531 TCATTGACAATTCCATCCGACGCGGCGAAGAATGCCAAGACGTGTGAGATGAAGTATCGC 320590 Query 133348 TCGTTGTCGTTCAAGC---GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| || ||||| | | |||||| | || || || || || || || || Sbjct 320591 TCGTCATCATTCAATCTATTGTTCCAGTCATGAAGATCTTTCGAGAGATCAACTTCTTCT 320650 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||||||||| ||||| ||||| |||||||| Sbjct 320651 GCGGTCCAAAACGATGCCTCTGCTTTCTTGTACAT 320685 >seq246 Length=239075 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| || || || || |||||||| | || |||||| | Sbjct 189646 AATGCAAATCTTCGTTAAAACCCTGACCGGAAAGACCATCACACTTGAAGTCGAGAGTTC 189587 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | || || | ||||| |||||| | || ||||| || || ||| |||| | Sbjct 189586 AGATACGATTGACAATG-TTAAATCAAAAATTCAAGATAAAGAAGGCATCCCCCCCGATC 189528 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| || ||||| || || || | || || ||| || || | Sbjct 189527 AGCAGCGCCTTATTTTCGCCGGAAAACAACTTGAGGATGGTCGTACTCTCTCGGATTATA 189468 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||| | || || ||| | || || ||| Sbjct 189467 ATATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGT 189430 >seq257 Length=236519 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT- 38311 ||||| || || ||||||||||| ||||||||| |||| |||||| ||| ||| | | | Sbjct 59186 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATC 59127 Query 38312 GCAAACGCTTAAAG-AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | ||||| ||||| | ||||| ||||| || || |||| || ||||| Sbjct 59126 GACAATG--TAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGAT 59069 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| ||||| ||||| || |||| || || || | || || || ||||| | Sbjct 59068 TGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGA 59009 Query 38431 AGGAAG 38436 ||| || Sbjct 59008 AGGTAG 59003 >seq12 Length=85050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| || ||||||| || || || || | ||| || |||||||| || Sbjct 76079 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 76138 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| ||||||||||| || ||||| |||| || || | || ||| Sbjct 76139 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 76198 Query 38457 CGT 38459 ||| Sbjct 76199 CGT 76201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170355405440