Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq279 138 1e-27 seq35 104 3e-17 seq79 98.7 1e-15 seq90 87.8 2e-12 >seq279 Length=233879 Score = 138 bits (152), Expect = 1e-27 Identities = 407/627 (65%), Gaps = 3/627 (0%) Strand=Plus/Plus Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 |||||||| || | ||| | ||| || |||||| | ||||| || || ||||| || Sbjct 179846 GGACAGAACAGAGTCCATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTC 179905 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || ||| || ||||| |||| | ||||| | || ||||| || || Sbjct 179906 CAAAGTGCAAGGAATAGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGA 179965 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 ||||| || || | |||||| |||||||| || || |||| || | | ||| Sbjct 179966 TCCAAGAATTCAAAAATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGG 180025 Query 110758 CGACG---ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 || ||| |||||| || || | || ||| |||||| || | |||||||||| Sbjct 180026 CGCTTGTTACCTCCCTGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGA 180085 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874 | |||||| | || ||||| || || ||| ||| | | |||| ||| | Sbjct 180086 ACAATTCCGTTTGAAGAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGG 180145 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934 || || | | |||||||||||| || ||| |||| | ||||| | | || || Sbjct 180146 TGAATGTTAAGACCAATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTG 180205 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 ||||||| || || || ||| |||| | |||| || ||||| || | ||||||| Sbjct 180206 TCATAAATGCCCTCGATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGA 180265 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGAC 111054 || | || || || || |||||||| ||||| | |||||| |||| ||| ||| Sbjct 180266 GGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGAC 180325 Query 111055 ATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACT 111114 || ||| ||||| || | | || || | ||||| || ||||| ||||| Sbjct 180326 ATGAGGTTATATGTCTCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACA 180385 Query 111115 CGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTC 111174 ||||| | ||| | || || || | ||| |||| | || | | |||| | Sbjct 180386 CGCATAATCATGTGCTGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAGAC 180445 Query 111175 TTCTCTAGGGTCTTGAGACCAAAGTAT 111201 |||| |||||||||| || || ||| Sbjct 180446 CTCTCCAGGGTCTTGAATCCGAAATAT 180472 >seq35 Length=378472 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 136707 ACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTC 136766 |||| || ||||||||||||||||||||||||||||| |||||||||||||| || |||| Sbjct 151397 ACCGGTCCTATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTC 151456 Query 136767 GAGCCCCGTTGGGAACAGCT 136786 || || |||||||| || || Sbjct 151457 GACCCTCGTTGGGACCATCT 151476 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 136707 ACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTC 136766 |||| || ||||||||||||||||||||||||||||| |||||||||||||| || |||| Sbjct 152081 ACCGGTCCTATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTC 152022 Query 136767 GAGCCCCGTTGGGAACA 136783 || || |||||||| || Sbjct 152021 GACCCTCGTTGGGACCA 152005 >seq79 Length=319511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 || ||||||||||||||||||||||||||||| |||||||||||||| || |||||| || Sbjct 113666 TCCTATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCC 113607 Query 136772 CCGTTGGGAACA 136783 |||||||| || Sbjct 113606 TCGTTGGGACCA 113595 >seq90 Length=319458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/323 (67%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 ||| || | ||| ||||||||||| ||||||| ||||| ||| ||| || || Sbjct 219237 CTTTCCAATAGCATCAATCTCATCAATGAATATAATACAAGGTGTGTTTTTCCGGGCGGT 219178 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG- 11791 | | || || ||||| || || | ||||| || || |||||||| ||||| | | Sbjct 219177 TGCAAACAGATCACGGACTCGGGAGGGGCCAACGCCAACAAACATCTCGACGAACTCAGA 219118 Query 11792 -CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | || ||| ||| | || ||||| ||||| ||||| | || || || | Sbjct 219117 CCCGC-TAACGCTGTA-AAATGGAACGCCTGACTCGCCAGCTGTAGCCTTTGCTAGCAAC 219060 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--- 11907 |||||||| ||||| |||| || | |||| || || | |||||||||||||||| Sbjct 219059 GTCTTACCGGTACCCGGTGGCCCTGAAAGAATAGCACCTCTGGGGATCTTGGCACCAAGC 219000 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | ||| | |||| || ||||| || ||| |||| ||| || || ||||| Sbjct 218999 CGTTGAAACT---GCTCCGGTTTCTTAAGAAAGCTGACAAATTCCATAATCTCAACCTTG 218943 Query 11968 GCGGAGTCGATACCCTCAACATC 11990 || ||| ||||| | ||||| Sbjct 218942 GCCTCGTCCATACCGGCTACATC 218920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973121379800