Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq279 138 1e-27
seq35 104 3e-17
seq79 98.7 1e-15
seq90 87.8 2e-12
>seq279
Length=233879
Score = 138 bits (152), Expect = 1e-27
Identities = 407/627 (65%), Gaps = 3/627 (0%)
Strand=Plus/Plus
Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637
|||||||| || | ||| | ||| || |||||| | ||||| || || ||||| ||
Sbjct 179846 GGACAGAACAGAGTCCATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTC 179905
Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697
|| | || ||| || ||||| |||| | ||||| | || ||||| || ||
Sbjct 179906 CAAAGTGCAAGGAATAGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGA 179965
Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757
||||| || || | |||||| |||||||| || || |||| || | | |||
Sbjct 179966 TCCAAGAATTCAAAAATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGG 180025
Query 110758 CGACG---ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814
|| ||| |||||| || || | || ||| |||||| || | ||||||||||
Sbjct 180026 CGCTTGTTACCTCCCTGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGA 180085
Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874
| |||||| | || ||||| || || ||| ||| | | |||| ||| |
Sbjct 180086 ACAATTCCGTTTGAAGAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGG 180145
Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934
|| || | | |||||||||||| || ||| |||| | ||||| | | || ||
Sbjct 180146 TGAATGTTAAGACCAATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTG 180205
Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994
||||||| || || || ||| |||| | |||| || ||||| || | |||||||
Sbjct 180206 TCATAAATGCCCTCGATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGA 180265
Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGAC 111054
|| | || || || || |||||||| ||||| | |||||| |||| ||| |||
Sbjct 180266 GGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGAC 180325
Query 111055 ATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACT 111114
|| ||| ||||| || | | || || | ||||| || ||||| |||||
Sbjct 180326 ATGAGGTTATATGTCTCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACA 180385
Query 111115 CGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTC 111174
||||| | ||| | || || || | ||| |||| | || | | |||| |
Sbjct 180386 CGCATAATCATGTGCTGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAGAC 180445
Query 111175 TTCTCTAGGGTCTTGAGACCAAAGTAT 111201
|||| |||||||||| || || |||
Sbjct 180446 CTCTCCAGGGTCTTGAATCCGAAATAT 180472
>seq35
Length=378472
Score = 104 bits (114), Expect = 3e-17
Identities = 71/80 (89%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 136707 ACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTC 136766
|||| || ||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 151397 ACCGGTCCTATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTC 151456
Query 136767 GAGCCCCGTTGGGAACAGCT 136786
|| || |||||||| || ||
Sbjct 151457 GACCCTCGTTGGGACCATCT 151476
Score = 104 bits (114), Expect = 3e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 136707 ACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTC 136766
|||| || ||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 152081 ACCGGTCCTATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTC 152022
Query 136767 GAGCCCCGTTGGGAACA 136783
|| || |||||||| ||
Sbjct 152021 GACCCTCGTTGGGACCA 152005
>seq79
Length=319511
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771
|| ||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||
Sbjct 113666 TCCTATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCC 113607
Query 136772 CCGTTGGGAACA 136783
|||||||| ||
Sbjct 113606 TCGTTGGGACCA 113595
>seq90
Length=319458
Score = 87.8 bits (96), Expect = 2e-12
Identities = 216/323 (67%), Gaps = 10/323 (3%)
Strand=Plus/Minus
Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732
||| || | ||| ||||||||||| ||||||| ||||| ||| ||| || ||
Sbjct 219237 CTTTCCAATAGCATCAATCTCATCAATGAATATAATACAAGGTGTGTTTTTCCGGGCGGT 219178
Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG- 11791
| | || || ||||| || || | ||||| || || |||||||| ||||| | |
Sbjct 219177 TGCAAACAGATCACGGACTCGGGAGGGGCCAACGCCAACAAACATCTCGACGAACTCAGA 219118
Query 11792 -CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850
| || ||| ||| | || ||||| ||||| ||||| | || || || |
Sbjct 219117 CCCGC-TAACGCTGTA-AAATGGAACGCCTGACTCGCCAGCTGTAGCCTTTGCTAGCAAC 219060
Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--- 11907
|||||||| ||||| |||| || | |||| || || | ||||||||||||||||
Sbjct 219059 GTCTTACCGGTACCCGGTGGCCCTGAAAGAATAGCACCTCTGGGGATCTTGGCACCAAGC 219000
Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967
| | ||| | |||| || ||||| || ||| |||| ||| || || |||||
Sbjct 218999 CGTTGAAACT---GCTCCGGTTTCTTAAGAAAGCTGACAAATTCCATAATCTCAACCTTG 218943
Query 11968 GCGGAGTCGATACCCTCAACATC 11990
|| ||| ||||| | |||||
Sbjct 218942 GCCTCGTCCATACCGGCTACATC 218920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588973121379800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |