Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq279 143 3e-29 seq326 96.9 4e-15 >seq279 Length=233879 Score = 143 bits (158), Expect = 3e-29 Identities = 361/549 (66%), Gaps = 0/549 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || ||||| ||||| |||| | || || || |||||| ||||| | || | Sbjct 179800 CTCGAACTCATCACCATAGACATCCGCCAAGCCTGGTGCTTCATTTGGACAGAACAGAGT 179859 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || ||| || | || | ||||||||| ||| ||| ||||||| || | || Sbjct 179860 CCATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAA 179919 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 || ||| | || | | |||||| ||||| || | || || | || || | Sbjct 179920 TAGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAA 179979 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 ||||| ||||||||| || | || || || | | ||||| || || |||||||| Sbjct 179980 AATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCC 180039 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| || || |||| | | ||| || ||||| || ||||| Sbjct 180040 CTGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGA 180099 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 ||||| ||||| | ||| || ||| || | | || ||| || ||| Sbjct 180100 AGAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACC 180159 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| || | || || ||||||||||| ||| ||||| |||||||| || || Sbjct 180160 AATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTC 180219 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || || || || |||||| | || || || | ||| || || || ||| || Sbjct 180220 GATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACC 180279 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | || || | || ||||| |||||| | || | || | || | | |||||||| Sbjct 180280 AGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGT 180339 Query 48665 TTCAATAAC 48673 ||||| || Sbjct 180340 CTCAATGAC 180348 >seq326 Length=563541 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/259 (68%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| || || || ||||| || ||||| || ||||| || |||| || || | | Sbjct 320436 TTTCGGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCAGGGA 320495 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 ||| ||||| | | || | ||||| | || ||||| || |||||||| || | Sbjct 320496 CCTGGACTTCTCCGCTGAAACGCTCGACGAGGTTCTCATTGACAATTCCATCCGACGCGG 320555 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT---CC 19435 | || ||||| || || ||| || || | | || || | ||| |||| || Sbjct 320556 CGAAGAATGCCAAGACGTGTGAGATGAAGTATCGCTCGTCATCATTCAATCTATTGTTCC 320615 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | |||| || |||||| || | ||| |||||||| | |||||||| || |||||||||| Sbjct 320616 AGTCATGAAGATCTTTCGAGAGATCAACTTCTTCTGCGGTCCAAAACGATGCCTCTGCTT 320675 Query 19496 TTTTATACATGTTCCATAT 19514 | || ||||| | ||| || Sbjct 320676 TCTTGTACATTTGCCAGAT 320694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106052693240