Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq246 136 3e-26 seq4 116 3e-20 seq190 100 2e-15 >seq246 Length=239075 Score = 136 bits (150), Expect = 3e-26 Identities = 166/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || |||||||| || ||| ||||| ||||| ||||| | ||||| Sbjct 189427 GAGACGGAGGACGAGATGAAGAGTGGACTCCTTTTGG--ATATTATAATCCGAGAGAGTA 189484 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| ||||||||||||||||| |||||||| | |||||||| || || || ||| Sbjct 189485 CGACCATCCTCAAGTTGTTTTCCGGCGAAAATAAGGCGCTGCTGATCGGGGGGGATGCCT 189544 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 |||||||||||||||||| ||| || ||||| ||||| | | || ||| || Sbjct 189545 TCTTTATCTTGAATTTTTGATTTAACATTGTCAATCGTATCTGAACTCTCGAC-TTCAAG 189603 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || || ||||||||||| |||||||| Sbjct 189604 TGTGATGGTCTTTCCGGTCAGGGTTTTAACGAAGATTTGCAT 189645 Score = 107 bits (118), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || || ||||| || || || || || |||||||| || | ||||| | ||| Sbjct 189206 AGGACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCCGAAAGAGTCCGACCATCC 189265 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || || ||||| || ||||| || || | ||||||||| || || || ||||| |||||| Sbjct 189266 TCGAGCTGTTTACCAGCAAAGATTAGACGTTGCTGATCCGGTGGGATACCTTCCTTATCT 189325 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442 || ||||| ||| || ||||| ||||| | | | ||| || |||| |||| Sbjct 189326 TGGATTTTAGATTTAACATTATCAATGGTATCGGAGCTCTCAACTTCAAGCGTAATAGTT 189385 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || ||||||||||| |||||||| Sbjct 189386 TTGCCGGTCAGGGTTTTAACGAAGATTTGCAT 189417 >seq4 Length=94551 Score = 116 bits (128), Expect = 3e-20 Identities = 362/551 (66%), Gaps = 22/551 (4%) Strand=Plus/Minus Query 549997 AGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGA 550056 |||||| ||| | || ||||| || || || ||| | | | ||| | | |||| Sbjct 75519 AGGTATCGATCTCGGGACCACGTACTCGTGCGTGGGTATCTTCCGGGATGACAGAATTGA 75460 Query 550057 AATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAAC 550116 ||| |||||||| || || |||||| | || || || || | ||| | ||||| || || Sbjct 75459 AATCATTGCCAACGACCAGGGTAACCGGACCACACCCTCGTTCGTTGCCTTCACAGACAC 75400 Query 550117 TGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176 || | | | | || ||||| || ||| |||||| | | || || |||| || | Sbjct 75399 CGAGCGTCTGATCGGGGATGCCGCCAAAAATCAAGTCGCCATGAACCCCTCCAACACAGT 75340 Query 550177 TTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATAT 550236 ||||| || || ||| | ||||| | | || ||| | || || | || || Sbjct 75339 CTTTGACGCCAAGCGTCTCATTGGCCGCAAATTCGCCGATCCTGAGGTCCAATCCGACAT 75280 Query 550237 GAAGCATTGGCCTTTCCAA---ATTGTTAATGTTTCTGGAAAACC--TTATAT---TGAA 550288 |||||| | || ||| | |||| || | | ||||| || | || | | | Sbjct 75279 GAAGCACTTCCCCTTCAAGGTCATTGACAAGG---CGGGAAAGCCAGTCATCTCCGTTGA 75223 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | || | || | || || || | || || |||| || || ||||| | Sbjct 75222 GTT---CAAGGGCGAAGAG--AAGCAGTTCACCCCGGAGGAAATCTCCTCCATGGTCCTG 75168 Query 550349 ATGAAAATGAAACAAACAGCC-AGTGCTT--TTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 | ||| |||| | |||| ||| ||| || ||| || || ||||| | || || Sbjct 75167 ACGAAGATGAGAGAAACTGCCGAGTCCTACCTTGGAGG-CAC--AGTTAACAACGCCGTC 75111 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | ||||| || || ||||| || || || || ||||||||||| || |||||||| | Sbjct 75110 GTTACTGTCCCCGCCTATTTCAACGATTCCCAGCGTCAAGCTACCAAGGATGCTGGTCTC 75051 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || ||||| || ||||| ||||| |||||||| ||||| |||||||| || |||| ||| Sbjct 75050 ATCGCTGGCCTGAATGTCCTTCGGATTATCAACGAACCCACTGCTGCCGCCATTGCCTAT 74991 Query 550526 GGACTTGATAA 550536 || ||||| || Sbjct 74990 GGTCTTGACAA 74980 >seq190 Length=258357 Score = 100 bits (110), Expect = 2e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || ||||| || |||||||||||||| |||||||| || | || Sbjct 249660 ACAGTCCCCGCCTACTTCAATGATTCTCAACGTCAAGCTACCAAAGATGCCGGTCAAATC 249601 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || ||||| ||| || ||||||| ||||| |||||||| ||||| || || Sbjct 249600 GCCGGTCTCAACGTTCTCCGTGTTGTCAATGAGCCTACCGCTGCTGCTCTTGCCTACGGT 249541 Query 550529 CTTGA 550533 || || Sbjct 249540 CTCGA 249536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029275322156590