Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq279 129 2e-24 seq359 95.1 4e-14 seq223 84.2 6e-11 >seq279 Length=233879 Score = 129 bits (142), Expect = 2e-24 Identities = 351/534 (66%), Gaps = 5/534 (1%) Strand=Plus/Plus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | |||||| || ||||| || || |||||||| |||||| ||| |||| Sbjct 179939 TCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAAATATCCATATGCCATGGC 179998 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || || || || ||||| || | |||| || ||||| || || || | ||| Sbjct 179999 TCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCCTGGTCGACGTATCTGGCA 180058 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || |||||||| || | |||||||||| ||| || || |||| |||||| ||||| | Sbjct 180059 GTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAAGAGCCATTCGTTCCAGCA 180118 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 || | ||||||| || | ||||| | || ||||||||||| | || Sbjct 180119 ATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCAATACCACCGGCGGTCTTT 180178 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 |||||| |||| || || | || | |||| || || || || || | ||| Sbjct 180179 GAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCGATGCTGTCTTCCTTCATA 180238 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | || ||||||| | ||||| | || || ||||||||||| || ||||| Sbjct 180239 TCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGA 180298 Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC-CTTAATCTTCTCAAG 156385 | |||||| | || ||||| | ||||| | |||||||| | | |||| || | Sbjct 180299 GAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTCTCAATGACTCTT-TCCAC 180357 Query 156386 ATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 | | ||||| || | |||| || | ||| ||| ||||| || |||||| ||| Sbjct 180358 GTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGCTGTGGGCGCTCTGCAAC 180417 Query 156446 CACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||| ||||| || | ||| | | ||||| || || || |||||||| Sbjct 180418 CTTGCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTGAATCCGAAATA 180471 >seq359 Length=463009 Score = 95.1 bits (104), Expect = 4e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||||||| | || |||||||||||||| ||||| ||||| |||||||| |||| || | Sbjct 303408 GGCGAGACCGCCCAGCGAGTCACGGTCAAGGAAGTTAGTTGGTTCGTCGAGGACGAGCAG 303349 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||| || | ||||||| || | || || || || || |||||||| |||||||| || Sbjct 303348 GTGTGGATTGTTCCACATGGCGCCGGCGAGGACGACTTTGACCTTCTGACCGCCTGAGAG 303289 >seq223 Length=582525 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| |||| ||||| |||||||| ||||||||| Sbjct 178141 AGAATTTCCTTGAGACGTGGTACACCGAGGGTAACGTT---CTTGGACGACACACCAGCA 178197 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| ||||||| || | || || | ||||| ||||| |||||||| | Sbjct 178198 AAATGGAAGGTATTCAAGGTCATCTGCGTTGCCGGCTCTCCAATTGACTGTGCCGCCAAA 178257 Query 301933 ATACCAACCATTTCTCCTGG 301952 | || |||||||| ||||| Sbjct 178258 ACGCCCACCATTTCACCTGG 178277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810226653767