Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq246 134 3e-26 seq257 93.3 8e-14 >seq246 Length=239075 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| || || || || ||||||||||| || ||| | | ||| Sbjct 189430 ACGGAGGACGAGATGAAGAGTGGACTCCTTTTGGATATTATAATCCGAGAGAGTACGACC 189489 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||||||||| || || || || | || ||||| || || || ||||| || Sbjct 189490 ATCCTCAAGTTGTTTTCCGGCGAAAATAAGGCGCTGCTGATCGGGGGGGATGCCTTCTTT 189549 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| |||| ||| ||||| ||||||||||| | || ||||| | || || Sbjct 189550 ATCTTGAATTTTTGATTTAACATTGTCAATCGTATCTGAACTCTCGACTTCAAGTGTGAT 189609 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || |||| || || || || || |||||| Sbjct 189610 GGTCTTTCCGGTCAGGGTTTTAACGAAGATTTGCATT 189646 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| | ||| || | || ||||| || ||||| ||||| || || || Sbjct 189191 CCACCCCGCAATCTCAGGACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCCGAA 189250 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || || || ||||| |||||||||||||| | ||| ||||| || || Sbjct 189251 AGAGTCCGACCATCCTCGAGCTGTTTACCAGCAAAGATTAGACGTTGCTGATCCGGTGGG 189310 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || |||||||||||||| || || | ||| ||||| ||||| ||||| || | || || Sbjct 189311 ATACCTTCCTTATCTTGGATTTTAGATTTAACATTATCAATGGTATC-GGAGCTCTCAAC 189369 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || || ||||| |||| || || || || || ||||| Sbjct 189370 TTCAAGCGTAATAGTTTTGCCGGTCAGGGTTTTAACGAAGATTTGCAT 189417 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| ||||| || || ||||| || ||||||||||| || | | ||| Sbjct 189966 ACGAAGAACCAAGTGGAGAGTTGACTCCTTCTGAATGTTATAATCAGAAAGGGTGCGACC 190025 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | || || || || || || || | ||| || || ||||| || |||||||| Sbjct 190026 GTCCTCCAACTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCAGGAGGAATCCCTTCCTT 190085 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||| || | || ||| | || || |||||| | || ||||| | ||||| Sbjct 190086 GTCCTGAATTTTGGACTTGACACTATCGATTGTATCAACCGACTCAACTTCGAGGGTTAT 190145 Query 82775 CGTCTTGCCTGT 82786 ||||| || || Sbjct 190146 AGTCTTTCCGGT 190157 >seq257 Length=236519 Score = 93.3 bits (102), Expect = 8e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| |||||||||||| ||| ||| ||||| || || || || ||||| ||||| Sbjct 59008 TTCTGGATATTATAATCACTTAGCGTTCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 59067 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | || || ||||| || || || || ||||| || || || || | |||||||| || Sbjct 59068 AATCGCTGCTGATCGGGTGGGATACCCTCCTTGTCCTGTATTTTCGACTTTACATTGTCG 59127 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || ||||| | | || || || | || || |||||||| || | ||||| || || Sbjct 59128 ATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 59186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822281352549