Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq279 172 7e-38
seq90 122 1e-22
>seq279
Length=233879
Score = 172 bits (190), Expect = 7e-38
Identities = 575/878 (65%), Gaps = 20/878 (2%)
Strand=Plus/Plus
Query 110552 TTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGA 110611
|||||||| | |||||||| | || || |||||||| || || | | || ||
Sbjct 178811 TTGATATCCTGTGGGATATTGGGAATGTTTTGGATGGAGCCTCCATCTGCAATAATTCGA 178870
Query 110612 TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTG 110671
| |||||| | | |||||||||||| | | | ||||| || | || | ||||
Sbjct 178871 TTCTTCATGTTGTCGGACCAGAGACCCAAGTCCACCAGGTCCTTCAAAAGCCACGGGTTG 178930
Query 110672 ACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCA 110731
||||| ||||| ||||| ||| | | | |||||| || | ||||| |||||
Sbjct 178931 ACAATTTGGAACTCGCCTGCAAGGACACGGCGCGAGTAGATATTAGAGGTGTAAGGTTCG 178990
Query 110732 AAGCATTCATTATTACCCAAGATTTGTGCG-GTGGAGGCTGTTGGCATTGGTGCCATCAA 110790
|||||||| || | |||||| | || ||| ||| || ||||| || || | |
Sbjct 178991 AAGCATTCGTTGA-ATCCAAGAATCTGGCTAGTGCTGGCAGTAGGCATGGGAGCAACAAG 179049
Query 110791 AAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTT 110850
| |||||| |||| || | || ||| | || ||| |||||| || ||
Sbjct 179050 CAAACTGTTGCGAACTCCATGCTTAGCGATCTCCTGTTTCAGAGAATCCCAATCCCAGA- 179108
Query 110851 GAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAA 110908
|| | | || | || ||||||| ||| ||||||| | || || || | ||||||
Sbjct 179109 GATCGGTGGGAGTGACAC-CCCACATATCATACTGAAGGATGCCCTGTGAGACTGGAGAA 179167
Query 110909 CCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGAT 110968
|| ||| | | ||| | || | | | ||| | |||||| ||| || |
Sbjct 179168 CCTTCATATGAGGAATATGGGCCGTCAACCTTAGCTAGCTCACAGGACGCAGTCAAACAG 179227
Query 110969 GCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAAT 111028
||||| || || |||||||| || || ||||| || |||||||||| |||||||||
Sbjct 179228 GCGTGGTAAATTGTTTCAAAAATTTGAATATTCAACTGCTTGGCTTCAGGGGAATCAAAT 179287
Query 111029 GCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCT 111087
| | || ||| | | || |||| || ||||| |||||||| | |||| || |
Sbjct 179288 G-GAAGTCGCAAAGCGAGGAAAGCATCAGCAAGACCCTGAACACCGCAGGCAATTGGGCG 179346
Query 111088 GTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146
|| || | || | || | || ||| || ||||| | |||| ||| |||| ||
Sbjct 179347 ATGGCGGAAGTTGCTTCGTTTG-GCTTCCTCGACTGGATAGTAGTTTCGGTCGATGATTC 179405
Query 111147 GGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAG 111203
||| || || | ||| | ||| || | ||| || || || || ||||| |
Sbjct 179406 TGTTAAGGTT---GCGAACGACGACTTGAGTTACTTCGTGGAGCTTGCCAAAATCATATT 179462
Query 111204 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 111263
| | | | ||| || | | || | ||| || || ||||| || ||||||||
Sbjct 179463 CTCCACGCACAGCATCCACGAAGGTAGGTAAGGCAATGGAAGCCAAGTTACAAACAGCAA 179522
Query 111264 TCTCATCC--TTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGT 111321
||||| | | | || | || | || || || |||| ||||| || |||| ||
Sbjct 179523 CTTCATCAGGTGAGCAGTAT--TCGATGATCTCGGTGCATAGATTGGAGCTTCTAATAGT 179580
Query 111322 CCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 111381
||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||| |
Sbjct 179581 CCCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTT 179640
Query 111382 CCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419
|| ||||| || || | | ||||||||| | |||||
Sbjct 179641 ACCAGTCTCAGTTTGAGCCTCGAGAATAGCATACCAAA 179678
Score = 127 bits (140), Expect = 3e-24
Identities = 378/580 (65%), Gaps = 11/580 (2%)
Strand=Plus/Plus
Query 111512 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571
|||||||| | | ||||||||| |||| ||||| |||| | |||||| || |||||
Sbjct 179831 CCTGGTGCTTCATTTGGACAGAACAGAGTCCATTCACCATTCTTCTCAACGCGTTTCATA 179890
Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631
|| || || || |||| || | || ||||| | | ||| | ||||| | ||
Sbjct 179891 AATAGATCAGGTGTCCAAAGTGCAAGGAATAGATCACGAGCACGAACTTCTTCCTTGCCG 179950
Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691
||||| || | || | ||| || | |||||| |||||||||||||| ||||
Sbjct 179951 TGGTTTTTCCGGAGATCCAAGAATTCAAAAATATCCATATGCCATGGCTCAAGGTAGATG 180010
Query 111692 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745
|| | | ||| | | ||| || | || | || || | || ||| ||
Sbjct 180011 GCAAACGCTCC---TGGGCGCTTGTTACCTCCCTGGTCGACGTATCTGGCAGTGTTATTG 180067
Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 111805
|| ||||| ||||| |||| ||| || | ||| ||||| || || ||| ||
Sbjct 180068 AAAACGCGGAGCATAGGAACAATTCCGTTTGAAGAGCCATTCGTTCCAGCAATGTAGGAA 180127
Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865
| | | | | || |||| | |||||||| || || |||||| ||| |
Sbjct 180128 CCAGTACCACGGATGCGGTGAATGTTAAGACCAATACCACCGGCGGTCTTTGAAATTAGA 180187
Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925
||||| | || || |||| || || | ||| ||| ||||| | | || |||
Sbjct 180188 GCACAAGTTTTCAGGGTGTCATAAATGCCCTCGATGCTGTCTTCCTTCATATCAATGAGG 180247
Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985
||||| || |||||| || || |||||||| ||||||||||| || | || |||
Sbjct 180248 AAGCACGAGGCCATCTGAGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGAGGCATGA 180307
Query 111986 ATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044
|||| ||| ||| ||||| || |||||||| | ||| || | ||| || ||
Sbjct 180308 GTGAA-GTACTTTTGCGACATGAGGTTATATGTCTCAATGACTCTTTCCACGTCATCTCC 180366
Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084
|||||| || || || || ||||| | ||||| |||||||
Sbjct 180367 GTGGATCCCAATAGCAACACGCATAATCATGTGCTGTGGG 180406
>seq90
Length=319458
Score = 122 bits (134), Expect = 1e-22
Identities = 332/501 (66%), Gaps = 27/501 (5%)
Strand=Plus/Minus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| ||||| || || | | || | ||| |||||||| || ||||| || | ||
Sbjct 219407 TCAAATCGACCAGGTCGCAACAACGCCTTATCTAGGATATCGACTCGATTGGTTCCAGCC 219348
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
| |||||||| | | ||| ||||||||||| ||||| || | ||||| | |
Sbjct 219347 AGAACCACAACTTGATCCGAGGTGTTGAAGCCATCCATTTCGGTCAGGATCTGATTCAAT 219288
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-----CTGCGTTG----CTTG 11623
|| || | |||||||||| | ||||||| | || || | |||
Sbjct 219287 GTGCTCTCGCGCTCATCATTTCC------ACCACCATAAGCGTTCTTCGATCTCGACTTT 219234
Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTC 11682
|| | |||||||||||||||||||| | |||||| ||| || ||||| |||||| || |
Sbjct 219233 CCAATAGCATCAATCTCATCAATGAATATAATACAAGGTGTGTTTTTC-CGGGCGGTTGC 219175
Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740
||| ||||| || || | || || || |||||||||||||| || || | | |
Sbjct 219174 AAACAGATCACGGACTCGGGAGGGGCCAACGCCAACAAACATCTCGACGAACTCAGACCC 219115
Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800
|| | | ||| | ||||| || ||| || || || | || || || | |||
Sbjct 219114 GC-TAACGCTGTA-AAATGGAACGCCTGACTCGCCAGCTGTAGCCTTTGCTAGCAACGTC 219057
Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA---CTT 11857
|| || ||||| || || | |||| || |||| |||||||||||||||| | |
Sbjct 219056 TTACCGGTACCCGGTGGCCCTGAAAGAATAGCACCTCTGGGGATCTTGGCACCAAGCCGT 218997
Query 11858 CCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCC 11917
||| | ||| |||| ||| ||||| |||| || || ||| | ||||||
Sbjct 218996 TGAAACT---GCTCCGGTTTCTTAAGAAAGCTGACAAATTCCATAATCTCAACCTTGGCC 218940
Query 11918 GCGTCAATCCCCTCAACATCA 11938
|||| || || | ||||||
Sbjct 218939 TCGTCCATACCGGCTACATCA 218919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628028930493600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |