Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq279 172 7e-38 seq90 122 1e-22 >seq279 Length=233879 Score = 172 bits (190), Expect = 7e-38 Identities = 575/878 (65%), Gaps = 20/878 (2%) Strand=Plus/Plus Query 110552 TTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGA 110611 |||||||| | |||||||| | || || |||||||| || || | | || || Sbjct 178811 TTGATATCCTGTGGGATATTGGGAATGTTTTGGATGGAGCCTCCATCTGCAATAATTCGA 178870 Query 110612 TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTG 110671 | |||||| | | |||||||||||| | | | ||||| || | || | |||| Sbjct 178871 TTCTTCATGTTGTCGGACCAGAGACCCAAGTCCACCAGGTCCTTCAAAAGCCACGGGTTG 178930 Query 110672 ACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCA 110731 ||||| ||||| ||||| ||| | | | |||||| || | ||||| ||||| Sbjct 178931 ACAATTTGGAACTCGCCTGCAAGGACACGGCGCGAGTAGATATTAGAGGTGTAAGGTTCG 178990 Query 110732 AAGCATTCATTATTACCCAAGATTTGTGCG-GTGGAGGCTGTTGGCATTGGTGCCATCAA 110790 |||||||| || | |||||| | || ||| ||| || ||||| || || | | Sbjct 178991 AAGCATTCGTTGA-ATCCAAGAATCTGGCTAGTGCTGGCAGTAGGCATGGGAGCAACAAG 179049 Query 110791 AAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTT 110850 | |||||| |||| || | || ||| | || ||| |||||| || || Sbjct 179050 CAAACTGTTGCGAACTCCATGCTTAGCGATCTCCTGTTTCAGAGAATCCCAATCCCAGA- 179108 Query 110851 GAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAA 110908 || | | || | || ||||||| ||| ||||||| | || || || | |||||| Sbjct 179109 GATCGGTGGGAGTGACAC-CCCACATATCATACTGAAGGATGCCCTGTGAGACTGGAGAA 179167 Query 110909 CCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGAT 110968 || ||| | | ||| | || | | | ||| | |||||| ||| || | Sbjct 179168 CCTTCATATGAGGAATATGGGCCGTCAACCTTAGCTAGCTCACAGGACGCAGTCAAACAG 179227 Query 110969 GCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAAT 111028 ||||| || || |||||||| || || ||||| || |||||||||| ||||||||| Sbjct 179228 GCGTGGTAAATTGTTTCAAAAATTTGAATATTCAACTGCTTGGCTTCAGGGGAATCAAAT 179287 Query 111029 GCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCT 111087 | | || ||| | | || |||| || ||||| |||||||| | |||| || | Sbjct 179288 G-GAAGTCGCAAAGCGAGGAAAGCATCAGCAAGACCCTGAACACCGCAGGCAATTGGGCG 179346 Query 111088 GTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146 || || | || | || | || ||| || ||||| | |||| ||| |||| || Sbjct 179347 ATGGCGGAAGTTGCTTCGTTTG-GCTTCCTCGACTGGATAGTAGTTTCGGTCGATGATTC 179405 Query 111147 GGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAG 111203 ||| || || | ||| | ||| || | ||| || || || || ||||| | Sbjct 179406 TGTTAAGGTT---GCGAACGACGACTTGAGTTACTTCGTGGAGCTTGCCAAAATCATATT 179462 Query 111204 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 111263 | | | | ||| || | | || | ||| || || ||||| || |||||||| Sbjct 179463 CTCCACGCACAGCATCCACGAAGGTAGGTAAGGCAATGGAAGCCAAGTTACAAACAGCAA 179522 Query 111264 TCTCATCC--TTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGT 111321 ||||| | | | || | || | || || || |||| ||||| || |||| || Sbjct 179523 CTTCATCAGGTGAGCAGTAT--TCGATGATCTCGGTGCATAGATTGGAGCTTCTAATAGT 179580 Query 111322 CCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 111381 ||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||| | Sbjct 179581 CCCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTT 179640 Query 111382 CCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 || ||||| || || | | ||||||||| | ||||| Sbjct 179641 ACCAGTCTCAGTTTGAGCCTCGAGAATAGCATACCAAA 179678 Score = 127 bits (140), Expect = 3e-24 Identities = 378/580 (65%), Gaps = 11/580 (2%) Strand=Plus/Plus Query 111512 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571 |||||||| | | ||||||||| |||| ||||| |||| | |||||| || ||||| Sbjct 179831 CCTGGTGCTTCATTTGGACAGAACAGAGTCCATTCACCATTCTTCTCAACGCGTTTCATA 179890 Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631 || || || || |||| || | || ||||| | | ||| | ||||| | || Sbjct 179891 AATAGATCAGGTGTCCAAAGTGCAAGGAATAGATCACGAGCACGAACTTCTTCCTTGCCG 179950 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||||| || | || | ||| || | |||||| |||||||||||||| |||| Sbjct 179951 TGGTTTTTCCGGAGATCCAAGAATTCAAAAATATCCATATGCCATGGCTCAAGGTAGATG 180010 Query 111692 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745 || | | ||| | | ||| || | || | || || | || ||| || Sbjct 180011 GCAAACGCTCC---TGGGCGCTTGTTACCTCCCTGGTCGACGTATCTGGCAGTGTTATTG 180067 Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 111805 || ||||| ||||| |||| ||| || | ||| ||||| || || ||| || Sbjct 180068 AAAACGCGGAGCATAGGAACAATTCCGTTTGAAGAGCCATTCGTTCCAGCAATGTAGGAA 180127 Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 | | | | | || |||| | |||||||| || || |||||| ||| | Sbjct 180128 CCAGTACCACGGATGCGGTGAATGTTAAGACCAATACCACCGGCGGTCTTTGAAATTAGA 180187 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 ||||| | || || |||| || || | ||| ||| ||||| | | || ||| Sbjct 180188 GCACAAGTTTTCAGGGTGTCATAAATGCCCTCGATGCTGTCTTCCTTCATATCAATGAGG 180247 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 ||||| || |||||| || || |||||||| ||||||||||| || | || ||| Sbjct 180248 AAGCACGAGGCCATCTGAGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGAGGCATGA 180307 Query 111986 ATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044 |||| ||| ||| ||||| || |||||||| | ||| || | ||| || || Sbjct 180308 GTGAA-GTACTTTTGCGACATGAGGTTATATGTCTCAATGACTCTTTCCACGTCATCTCC 180366 Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 |||||| || || || || ||||| | ||||| ||||||| Sbjct 180367 GTGGATCCCAATAGCAACACGCATAATCATGTGCTGTGGG 180406 >seq90 Length=319458 Score = 122 bits (134), Expect = 1e-22 Identities = 332/501 (66%), Gaps = 27/501 (5%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| ||||| || || | | || | ||| |||||||| || ||||| || | || Sbjct 219407 TCAAATCGACCAGGTCGCAACAACGCCTTATCTAGGATATCGACTCGATTGGTTCCAGCC 219348 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | |||||||| | | ||| ||||||||||| ||||| || | ||||| | | Sbjct 219347 AGAACCACAACTTGATCCGAGGTGTTGAAGCCATCCATTTCGGTCAGGATCTGATTCAAT 219288 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-----CTGCGTTG----CTTG 11623 || || | |||||||||| | ||||||| | || || | ||| Sbjct 219287 GTGCTCTCGCGCTCATCATTTCC------ACCACCATAAGCGTTCTTCGATCTCGACTTT 219234 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTC 11682 || | |||||||||||||||||||| | |||||| ||| || ||||| |||||| || | Sbjct 219233 CCAATAGCATCAATCTCATCAATGAATATAATACAAGGTGTGTTTTTC-CGGGCGGTTGC 219175 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740 ||| ||||| || || | || || || |||||||||||||| || || | | | Sbjct 219174 AAACAGATCACGGACTCGGGAGGGGCCAACGCCAACAAACATCTCGACGAACTCAGACCC 219115 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 || | | ||| | ||||| || ||| || || || | || || || | ||| Sbjct 219114 GC-TAACGCTGTA-AAATGGAACGCCTGACTCGCCAGCTGTAGCCTTTGCTAGCAACGTC 219057 Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA---CTT 11857 || || ||||| || || | |||| || |||| |||||||||||||||| | | Sbjct 219056 TTACCGGTACCCGGTGGCCCTGAAAGAATAGCACCTCTGGGGATCTTGGCACCAAGCCGT 218997 Query 11858 CCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCC 11917 ||| | ||| |||| ||| ||||| |||| || || ||| | |||||| Sbjct 218996 TGAAACT---GCTCCGGTTTCTTAAGAAAGCTGACAAATTCCATAATCTCAACCTTGGCC 218940 Query 11918 GCGTCAATCCCCTCAACATCA 11938 |||| || || | |||||| Sbjct 218939 TCGTCCATACCGGCTACATCA 218919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028930493600