Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq279 154 2e-32
seq326 102 9e-17
>seq279
Length=233879
Score = 154 bits (170), Expect = 2e-32
Identities = 389/589 (66%), Gaps = 2/589 (0%)
Strand=Plus/Minus
Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177
||||| || || | || ||||| || || ||| | ||||| |||||||| ||
Sbjct 180390 ATGCGTGTTGCTATTGGGATCCACGGAGATGACGTGGAAAGAGTCATTGAGACATATAAC 180331
Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237
|| ||| || |||| |||||| || || | || ||||| |||||||| ||||| |
Sbjct 180330 CTCATGTCGCAAAAGTACTTCACTCATGCCTCTCCTACCCTCTTCAACGCTGGTACTCCC 180271
Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297
| || |||||| | || ||||| | | ||||||||| |||||||| ||||||||
Sbjct 180270 CAGCCTCAGATGGCCTCGTGCTTCCTCATTGATATGAAGGAAGACAGCATCGAGGGCATT 180211
Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357
|| || || || || || || | || || ||| |||| ||||| || | ||
Sbjct 180210 TATGACACCCTGAAAACTTGTGCTCTAATTTCAAAGACCGCCGGTGGTATTGGTCTTAAC 180151
Query 19358 -TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGG 19416
| | | ||||| | |||| | || ||| ||||| || | ||||
Sbjct 180150 ATTCACCGC-ATCCGTGGTACTGGTTCCTACATTGCTGGAACGAATGGCTCTTCAAACGG 180092
Query 19417 TATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGG 19476
|| || || ||||||||||| ||||| ||||| ||||| |||||| ||||||| ||
Sbjct 180091 AATTGTTCCTATGCTCCGCGTTTTCAATAACACTGCCAGATACGTCGACCAGGGAGGTAA 180032
Query 19477 CAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTT 19536
||| ||| || |||| ||||||||||| ||||||||||| ||| | | || ||
Sbjct 180031 CAAGCGCCCAGGAGCGTTTGCCATCTACCTTGAGCCATGGCATATGGATATTTTTGAATT 179972
Query 19537 CCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGC 19596
| | || || || ||||| || | || || | || ||| || || ||| ||
Sbjct 179971 CTTGGATCTCCGGAAAAACCACGGCAAGGAAGAAGTTCGTGCTCGTGATCTATTCCTTGC 179912
Query 19597 CTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGAT 19656
| |||| || || ||||| ||| | ||||||||| | | |||||| ||| |
Sbjct 179911 ACTTTGGACACCTGATCTATTTATGAAACGCGTTGAGAAGAATGGTGAATGGACTCTGTT 179852
Query 19657 GTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705
|| || | ||| || ||| | | || ||||| || || | ||||
Sbjct 179851 CTGTCCAAATGAAGCACCAGGCTTGGCGGATGTCTATGGTGATGAGTTC 179803
Score = 143 bits (158), Expect = 3e-29
Identities = 394/600 (66%), Gaps = 3/600 (1%)
Strand=Plus/Plus
Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365
|| ||||||||||| | || ||| || || | || || | ||| ||| || |
Sbjct 179810 TCACCATAGACATCCGCCAAGCCTGGTGCTTCATTTGGACAGAACAGAGTCCATTCACCA 179869
Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425
| ||||||||| | ||| || || || || |||| || || ||| || || ||
Sbjct 179870 TTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAATAGATCACGA 179929
Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485
||| | || || | ||| ||||| || || || | || || | || ||
Sbjct 179930 GCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAAATATCCATA 179989
Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545
||||| ||||| || |||||||| |||| || ||||||| || ||||||| ||||
Sbjct 179990 TGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCCTGGTCGACG 180049
Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605
|| | ||| ||||| |||||||| |||||||| || || || |||| | ||| |||
Sbjct 180050 TATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAAGAGCCATTC 180109
Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCC 79664
|| || || | ||| | | || ||| | | | || | || || || ||
Sbjct 180110 GTTCCAGCAATGTAGGAACCAGTACCACGGATG-CGGTGAATGTTAAGACCAATACCACC 180168
Query 79665 GGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTC 79724
|| ||| || || | || || || || || || || ||||||||||| |||
Sbjct 180169 GGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCGATGCTGTC 180228
Query 79725 GTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAA 79784
||||||||| | | |||||||| | |||||| || | | ||||| ||||||||
Sbjct 180229 TTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCAGCGTTGAA 180288
Query 79785 GAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC 79844
|||||| || | || || |||||| ||||||| ||| || | || ||||| ||||
Sbjct 180289 GAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTCTCAATGAC 180348
Query 79845 GCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGGCG 79903
| | ||| || |||||||| || | || || ||||| | | || ||| |||||
Sbjct 180349 TCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGCTGTGGGCG 180408
>seq326
Length=563541
Score = 102 bits (112), Expect = 9e-17
Identities = 111/142 (78%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
|||||||| |||||| | || ||||| ||| || ||||| ||||||||| ||| || ||
Sbjct 320243 TTTGCACAGCGTCTCGTCGCCTTTGC-TGCTGTCGAAGGTATCTTCTTCAGTGGATCCTT 320185
Query 60032 CTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090
|| | | || |||||||| || ||||||||||| ||||| ||||| | || ||||| |
Sbjct 320184 -TGCGTCAATCTTCTGGCTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATG 320126
Query 60091 AGCTGATTTCCCGGGACGAGGG 60112
|||| || || || || |||||
Sbjct 320125 AGCTTATCTCTCGTGATGAGGG 320104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548522119085040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |