Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq246 170 2e-37 seq257 131 2e-25 seq279 118 1e-21 seq12 116 4e-21 seq326 113 5e-20 >seq246 Length=239075 Score = 170 bits (188), Expect = 2e-37 Identities = 178/232 (77%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || |||||||| |||||||| ||||| |||||| || | Sbjct 189417 ATGCAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAG--AGCT 189360 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| ||||| ||| | || ||||||| || || ||||| || || || || || | Sbjct 189359 CCGATACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATC 189300 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| |||||||| ||||||||||| || |||||||||| ||| || || | ||||| | Sbjct 189299 AGCAACGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACA 189240 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || |||| ||||| |||||| ||||| ||| || | | || ||||| || Sbjct 189239 ATATCCAGAAGGAGAGCACTCTCCATCTGGTCCTGAGATTGCGGGGTGGCCA 189188 Score = 167 bits (184), Expect = 3e-36 Identities = 176/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || ||||| ||||| || || ||||| || ||| || Sbjct 189646 AATGCAAATCTTCGTTAAAACCCTGACCGGAAAGACCATCACACTTGAAGTCGAG--AGT 189589 Query 27465 T--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| |||| ||| | || | |||||||| || || || || || || || || Sbjct 189588 TCAGATACGATTGACAATGTTAAATCAAAAATTCAAGATAAAGAAGGCATCCCCCCCGAT 189529 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || ||||| || || || ||||| ||||||| |||||| || | || ||| Sbjct 189528 CAGCAGCGCCTTATTTTCGCCGGAAAACAACTTGAGGATGGTCGTACTCTCTCGGATTAT 189469 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||||||||| |||||||||||||| ||| | ||||| || ||||| Sbjct 189468 AATATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCCGTGGTGG 189419 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||| || || ||||| ||||| || || || ||||| |||||| |||| ||| | Sbjct 189861 GTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCGAC 189802 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | ||||| || || || || || |||||||||||||||||||| ||||| Sbjct 189801 AACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAATC 189742 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||| | ||||||||| | || || ||| | || ||||| Sbjct 189741 TTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGGAG 189682 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||| | || | ||||| || || ||| Sbjct 189681 TCCACTCTTCACTTGGTTCTTCGTCTGCGTGGAGGA 189646 Score = 145 bits (160), Expect = 9e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||| |||||||| || || || |||||||| | ||||| || | | | | ||| Sbjct 190159 TTACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGT 190100 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | ||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || | Sbjct 190099 CCAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCA 190040 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| | ||||| | ||| ||||| | || ||||| | || ||||| || ||||| | Sbjct 190039 AGCAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCC 189980 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || | |||||||| || || Sbjct 189979 ACTTGGTTCTTCGTCTTCGTGGCGG 189955 >seq257 Length=236519 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||| ||||| | |||| ||| Sbjct 59187 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCAT 59128 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | ||||| |||||||||||||| || || || || |||||||| | Sbjct 59127 CGACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATT 59068 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| ||||| |||||||| | || || ||| || |||||| |||| || Sbjct 59067 GATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAA 59008 Query 27594 GG 27595 || Sbjct 59007 GG 59006 >seq279 Length=233879 Score = 118 bits (130), Expect = 1e-21 Identities = 290/433 (67%), Gaps = 14/433 (3%) Strand=Plus/Plus Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG---CCACCC 81384 || ||| |||||||||||| || || | ||| | || || ||| | || ||| Sbjct 179981 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 180040 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| |||||| | |||||| || || || || | |||||| | || || | ||| Sbjct 180041 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 180100 Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGC--TGATTGA-AAGA 81501 || ||||| || | || || || | | || | ||| ||| || |||| Sbjct 180101 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGA---TGCGGTGAATGTTAAGA 180157 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 || || ||||| | ||||||||| ||||||| |||| ||| |||||||| ||| Sbjct 180158 CCAATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCC 180217 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||||| |||| ||||| |||| | ||| || | ||||||||| | ||| Sbjct 180218 TCGATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGG--CTGGGGAG 180275 Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679 || || ||||| || || || | || ||| |||| || | ||||| |||| || Sbjct 180276 TACCAGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTAT 180335 Query 81680 AGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 | || || |||| | | | || || ||||| || || ||||| |||||||||| || Sbjct 180336 ATGTCTCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCA 180395 Query 81740 TGTACTG-GGGCG 81751 ||| ||| ||||| Sbjct 180396 TGTGCTGTGGGCG 180408 >seq12 Length=85050 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||||||||| ||||| |||||||| ||||| || || || ||||| || |||||| Sbjct 76079 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 76138 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||| ||||| | ||||| || | || ||||| || || || || || ||| || Sbjct 76139 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 76198 Query 27619 CGTCTTCGCGGTGG 27632 |||||||| ||||| Sbjct 76199 CGTCTTCGTGGTGG 76212 >seq326 Length=563541 Score = 113 bits (124), Expect = 5e-20 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT-GA--ATCGTGGGTCGTCGTTTGGTCAGCGT 64719 ||||||||||| ||||| ||||| ||||| || | | ||| | |||| |||||| Sbjct 320291 AAAAAGGCTGATTGGGCTATCCGCTGGATCGAAGACAAAGAGTCTACCTTTGCACAGCGT 320232 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || ||||| ||| ||||| || ||||| ||| || || || || ||| Sbjct 320231 CTCGTCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTC 320172 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| ||||| |||||||| || | ||||| || ||||| |||||||| Sbjct 320171 TGGCTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGT 320112 Query 64840 GACGAGGG 64847 || ||||| Sbjct 320111 GATGAGGG 320104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307612607920