Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq246 170 2e-37
seq257 131 2e-25
seq279 118 1e-21
seq12 116 4e-21
seq326 113 5e-20
>seq246
Length=239075
Score = 170 bits (188), Expect = 2e-37
Identities = 178/232 (77%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || || || || |||||||| |||||||| ||||| |||||| || |
Sbjct 189417 ATGCAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAG--AGCT 189360
Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|||| ||||| ||| | || ||||||| || || ||||| || || || || || |
Sbjct 189359 CCGATACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATC 189300
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|||| |||||||| ||||||||||| || |||||||||| ||| || || | ||||| |
Sbjct 189299 AGCAACGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACA 189240
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|| |||| ||||| |||||| ||||| ||| || | | || ||||| ||
Sbjct 189239 ATATCCAGAAGGAGAGCACTCTCCATCTGGTCCTGAGATTGCGGGGTGGCCA 189188
Score = 167 bits (184), Expect = 3e-36
Identities = 176/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || || || || ||||| ||||| || || ||||| || ||| ||
Sbjct 189646 AATGCAAATCTTCGTTAAAACCCTGACCGGAAAGACCATCACACTTGAAGTCGAG--AGT 189589
Query 27465 T--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
| |||| |||| ||| | || | |||||||| || || || || || || || ||
Sbjct 189588 TCAGATACGATTGACAATGTTAAATCAAAAATTCAAGATAAAGAAGGCATCCCCCCCGAT 189529
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || ||||| || || || ||||| ||||||| |||||| || | || |||
Sbjct 189528 CAGCAGCGCCTTATTTTCGCCGGAAAACAACTTGAGGATGGTCGTACTCTCTCGGATTAT 189469
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||| |||||||||| |||||||||||||| ||| | ||||| || |||||
Sbjct 189468 AATATCCAAAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCCGTGGTGG 189419
Score = 147 bits (162), Expect = 2e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
||||| || || ||||| ||||| || || || ||||| |||||| |||| ||| |
Sbjct 189861 GTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCGAC 189802
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | ||||| || || || || || |||||||||||||||||||| |||||
Sbjct 189801 AACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAATC 189742
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || ||||| || ||||| | ||||||||| | || || ||| | || |||||
Sbjct 189741 TTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGGAG 189682
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
||||||||||| | || | ||||| || || |||
Sbjct 189681 TCCACTCTTCACTTGGTTCTTCGTCTGCGTGGAGGA 189646
Score = 145 bits (160), Expect = 9e-30
Identities = 155/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487
||||||| |||||||| || || || |||||||| | ||||| || | | | | |||
Sbjct 190159 TTACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGT 190100
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
| ||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || |
Sbjct 190099 CCAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCA 190040
Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607
|||| | ||||| | ||| ||||| | || ||||| | || ||||| || ||||| |
Sbjct 190039 AGCAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCC 189980
Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | || | |||||||| || ||
Sbjct 189979 ACTTGGTTCTTCGTCTTCGTGGCGG 189955
>seq257
Length=236519
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || || |||||||| || || || ||||| ||||| | |||| |||
Sbjct 59187 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCAT 59128
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | ||||| |||||||||||||| || || || || |||||||| |
Sbjct 59127 CGACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATT 59068
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| ||||| |||||||| | || || ||| || |||||| |||| ||
Sbjct 59067 GATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAA 59008
Query 27594 GG 27595
||
Sbjct 59007 GG 59006
>seq279
Length=233879
Score = 118 bits (130), Expect = 1e-21
Identities = 290/433 (67%), Gaps = 14/433 (3%)
Strand=Plus/Plus
Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG---CCACCC 81384
|| ||| |||||||||||| || || | ||| | || || ||| | || |||
Sbjct 179981 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 180040
Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444
|||| |||||| | |||||| || || || || | |||||| | || || | |||
Sbjct 180041 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 180100
Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGC--TGATTGA-AAGA 81501
|| ||||| || | || || || | | || | ||| ||| || ||||
Sbjct 180101 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGA---TGCGGTGAATGTTAAGA 180157
Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561
|| || ||||| | ||||||||| ||||||| |||| ||| |||||||| |||
Sbjct 180158 CCAATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCC 180217
Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621
|||||||| |||| ||||| |||| | ||| || | ||||||||| | |||
Sbjct 180218 TCGATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGG--CTGGGGAG 180275
Query 81622 --CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679
|| || ||||| || || || | || ||| |||| || | ||||| |||| ||
Sbjct 180276 TACCAGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTAT 180335
Query 81680 AGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739
| || || |||| | | | || || ||||| || || ||||| |||||||||| ||
Sbjct 180336 ATGTCTCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCA 180395
Query 81740 TGTACTG-GGGCG 81751
||| ||| |||||
Sbjct 180396 TGTGCTGTGGGCG 180408
>seq12
Length=85050
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
|||||||||||||| ||||| |||||||| ||||| || || || ||||| || ||||||
Sbjct 76079 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 76138
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | ||| ||||| | ||||| || | || ||||| || || || || || ||| ||
Sbjct 76139 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTCCTG 76198
Query 27619 CGTCTTCGCGGTGG 27632
|||||||| |||||
Sbjct 76199 CGTCTTCGTGGTGG 76212
>seq326
Length=563541
Score = 113 bits (124), Expect = 5e-20
Identities = 139/188 (74%), Gaps = 3/188 (2%)
Strand=Plus/Minus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT-GA--ATCGTGGGTCGTCGTTTGGTCAGCGT 64719
||||||||||| ||||| ||||| ||||| || | | ||| | |||| ||||||
Sbjct 320291 AAAAAGGCTGATTGGGCTATCCGCTGGATCGAAGACAAAGAGTCTACCTTTGCACAGCGT 320232
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|||| || ||||| ||| ||||| || ||||| ||| || || || || |||
Sbjct 320231 CTCGTCGCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTC 320172
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||||| || ||||| ||||| |||||||| || | ||||| || ||||| ||||||||
Sbjct 320171 TGGCTGAAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGT 320112
Query 64840 GACGAGGG 64847
|| |||||
Sbjct 320111 GATGAGGG 320104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570307612607920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |