Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq279 233 3e-56 seq326 123 3e-23 >seq279 Length=233879 Score = 233 bits (258), Expect = 3e-56 Identities = 595/900 (66%), Gaps = 14/900 (2%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || || ||||| || | ||||| |||| || || ||||||||| || | || | | Sbjct 179801 TCGAACTCATCACCATAGACATCCGCCAAGCCTGGTGCTTCATTTGGACAGAACAGAGTC 179860 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || ||||||| | || ||| ||||||||||| ||||||||| |||| || |||| ||| Sbjct 179861 CATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGTCCAAAGTGCAAGGAAT 179920 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| || | | | |||||| || || || || ||||| | || || | | Sbjct 179921 AGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAGATCCAAGAATTCAAAA 179980 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||| ||||||||| || || || || || | |||| || || || ||||||||| Sbjct 179981 ATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGGGCGCTTGTTACCTCCC 180040 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | |||||||| |||||||| |||| | | ||| |||| ||| ||||| || Sbjct 180041 TGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGGAACAATTCCGTTTGAA 180100 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 | ||||| ||||||| ||| || ||| | | || || |||| | || Sbjct 180101 GAGCCATTCGTTCCAGCAATGTAGGAACCAGTACCACGGATGCGGTGAATGTTAAGACCA 180160 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || || || || |||| || |||||||| ||| ||||| || || || || ||||| Sbjct 180161 ATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGGTGTCATAAATGCCCTCG 180220 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 || ||||| ||| |||| | || || || || | ||| ||| | || ||| || Sbjct 180221 ATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCTGAGGCTGGGGAGTACCA 180280 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 || || || | || ||||| ||||| || || | |||| || | || || ||||| Sbjct 180281 GCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCGACATGAGGTTATATGTC 180340 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 ||||| || ||| | ||| | || || || | || |||||||| | ||| ||| Sbjct 180341 TCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAACACGCATAATCATGTGC 180400 Query 78525 TGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 78584 || || | || | ||| ||| ||| | |||||| || | |||| || || Sbjct 180401 TGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAGACCTCTCCAGGGTCTTG 180460 Query 78585 AAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 || || ||||| | ||| ||||| | ||||||| |||| | || || | | ||| Sbjct 180461 AATCCGAAATATTGGTAGTTGAAGTCGCGATCGTAAACAATAGCTGAGTTGAACTCATCC 180520 Query 78645 TTGTATTTGGTAACAATATCCATGACAGTAGT---TGAAATAATAGG---AGATCGTACA 78698 | | | | || || || | ||| | ||| || || || || ||| Sbjct 180521 GCATGTCTCATTACGATTTC---GTACGTACTCTGTGATATCATGGGGGCAGGACGT--- 180574 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTA-AATAGtttttt 78757 || || || ||||| |||| | | ||| || || || || | ||| | || || Sbjct 180575 CCGTTCTTGGGATTGTGGTAGTGGTACAGATCATCTATCAC-GGACGAGAATTGCTTCTT 180633 Query 78758 tGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 |||| |||||| || || |||||||| || | ||||||||||| || || || ||||| Sbjct 180634 GGTTTGCTTGTGAAGGTTGGATACAGCAATCCGAGCAGCTAGAATTGCGTAGTCTGGATG 180693 Score = 181 bits (200), Expect = 1e-40 Identities = 710/1106 (64%), Gaps = 34/1106 (3%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||||| || ||||| ||||||| ||| |||| ||||||| ||||| ||||| Sbjct 178576 TTCTTGATCCACAGTGAACTGGATTGGAGCAGACGCGGCCATTGTACGGAGATAATACAT 178635 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 ||||| || | || || |||| ||| ||| |||||||| || | || | | Sbjct 178636 GCCAGTCTTCAAGCCGAGTTTCCAGCCGGTGAAGTGCATGCTGGTAATCTT-----ACCC 178690 Query 76889 AGGATCGGCT-----ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTA 76943 | | | |||| | |||||||| | || ||| ||| |||||||| || |||| | Sbjct 178691 ATGGTGGGCTCCTTCAAGTGAATATTGAGAGATTGAGATTGGTCGATGAAGGCACCTCGA 178750 Query 76944 TCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGT 77003 || || ||||| | | |||||| |||| |||||||| | |||||| ||| | | Sbjct 178751 TCGGCAGCCATCTGAACAATGGTTCGCTGAGAGATTTCCCAGACGGTTTTGTAAAGTGCT 178810 Query 77004 TTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTA 77060 |||||||| | ||| | || | | ||||| ||||| || ||||||| |||||| | Sbjct 178811 TTGATATCCTGTGGGATATTGGGAATGTTTTGGATGGAGCCTCCATCTGCAATAATTCGA 178870 Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || | || ||| | | || | | | | || || || Sbjct 178871 TTCTTCATGTTGTCGGACCAGAGACCCAAGTCCACCAGGTCCTTCAAAAGCCACGGGTTG 178930 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || ||||| || || || | | || | || | ||| |||||| ||| || ||||| Sbjct 178931 ACAATTTGGAACTCGCCTGCAAGGACACGGCGCGAGTAGATATTAGAGGTGTAAGGTTCG 178990 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | |||| ||| ||| | ||| || ||| ||||| ||||| || || || | Sbjct 178991 AAGCATTCGTTGAATCCAAGAATCTGGCTAGTGCTGGCAGTAGGCATGGGAGCAACAAGC 179050 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 ||||| || | | ||||| | ||| | | ||| ||| | | ||||||||| ||| Sbjct 179051 AAACTGTTGCGAACTCCATGCTTAGCGATCTCCTGTTTCAGAGAATCCCAATCCCAGAGA 179110 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTT----ACTAGCATATGA 77356 || | || ||| |||| | ||| || || || || || | ||| | || Sbjct 179111 TCGGTGGGAGTGACACCCCACATATCATACTGAAGGATGCCCTGTGAGACTGGA----GA 179166 Query 77357 TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 || | ||||| ||| || || || | |||||| ||||| ||| ||| Sbjct 179167 ACCTTCATATGAGGAATATGGGCCGTCAACCTTAGCTAGCTCACAGGACGCAGTCAAACA 179226 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAA 77475 ||| ||||||||||| ||||| | |||| | | |||| |||||| ||||| Sbjct 179227 GGCGTGGTAAATTGTTTCAAAAATTTGAATATTCAACTGCTTG-GCTTCAGGGGAATCAA 179285 Query 77476 ACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTC 77535 | ||| | ||| | || ||||| || | |||||||| || |||| || | Sbjct 179286 ATGGAAGTCGCAAAGCGAGGAAAGCATCAGCAAGACCCTGAACACCGCAGGCAATTGGGC 179345 Query 77536 TATGTCTCTTATTGGAAATTTTAGCTTC-TGGAATAGGATAATAATTAATGTCTATAATT 77594 ||| | ||| ||| ||||| | || | ||||| || || ||| || ||| Sbjct 179346 GATGGCGGAAGTTGCTTCGTTTGGCTTCCTCGACT-GGATAGTAGTTTCGGTCGATGATT 179404 Query 77595 TTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 | || || || | ||| || |||| | || || | || || ||||||| || | Sbjct 179405 CTGTTAAGGTTGCGAACGACGACTTGAGTTACTTCGTGGAGCTTGCCAAAATCATATTCT 179464 Query 77655 CCATCTATAACAAACATGTTC------AAAGCTATAGATGCTAGATTACAAACTGCTACC 77708 ||| | | || || | || || || || || | |||||||| || || Sbjct 179465 CCACGCACAGCATCCACGAAGGTAGGTAAGGCAATGGAAGCCAAGTTACAAACAGCAACT 179524 Query 77709 TCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCC 77767 |||| || || ||| |||| || |||||||| |||||||| | | | ||||| || Sbjct 179525 TCATCAG-GTGAGCAGTATTCGATGATCTCGGTGCATAGATTGGAGCTTCTAATAGTCCC 179583 Query 77768 CAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCC 77827 ||| || | |||||||||||| || ||||| | ||||| || || ||||| || | || Sbjct 179584 CAGGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACC 179643 Query 77828 GGTTTCAATCTGTGATTCGATAATAG 77853 || ||| | || | |||| ||||| Sbjct 179644 AGTCTCAGTTTGAGCCTCGAGAATAG 179669 >seq326 Length=563541 Score = 123 bits (136), Expect = 3e-23 Identities = 196/278 (71%), Gaps = 11/278 (4%) Strand=Plus/Plus Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 |||||||||| || ||||| || ||||| || ||||| || |||| || || | || Sbjct 320436 TTTCGGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCAGGGA 320495 Query 48496 TCTGTAC--CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 ||| || ||||| ||| || || | | |||||||| || |||||||| || Sbjct 320496 CCTGGACTTCTCCGCTGAAA--CGCTCGACGAGGTTCTCATTGACAATTCCATCCGACGC 320553 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT--- 48610 || || ||||| || || ||| || || ||| |||| | ||| | |||| Sbjct 320554 GGCGAAGAATGCCAAGACGTGTGAGATGAAGTATCGCTCGTCATCATTCAATCTATTGTT 320613 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||||| | |||||| || | ||| |||||||| || |||||||| ||||||||||| Sbjct 320614 CCAGTCATGAAGATCTTTCGAGAGATCAACTTCTTCTGCGGTCCAAAACGATGCCTCTGC 320673 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTG 48708 ||| || ||||| | ||| || |||| ||| |||| Sbjct 320674 TTTCTTGTACATTTGCCAGAT----CTGTGTTGAATTG 320707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665404806240