Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq246 156 1e-32 seq257 102 2e-16 seq12 87.8 4e-12 >seq246 Length=239075 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| || ||||| || || || || || ||||| Sbjct 189642 CAAATCTTCGTTAAAACCCTGACCGGAAAGACCATCACACTTGAAGTCGAGAGTTCAGAT 189583 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || |||||||| ||||| || || ||||| Sbjct 189582 ACGATTGACAATGTTAAATCAAAAATTCAAGATAAAGAAGGCATCCCCCCCGATCAGCAG 189523 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| |||||||||||||| || || ||||| | ||||| | |||||||| || Sbjct 189522 CGCCTTATTTTCGCCGGAAAACAACTTGAGGATGGTCGTACTCTCTCGGATTATAATATC 189463 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || ||||| || Sbjct 189462 CAAAAGGAGTCCACTCTTCATCTCGT 189437 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || || ||||| || || || || || || ||||| || Sbjct 189414 CAAATCTTCGTTAAAACCCTGACCGGCAAAACTATTACGCTTGAAGTTGAGAGCTCCGAT 189355 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || || || || || ||||| ||||| ||||| |||||| Sbjct 189354 ACCATTGATAATGTTAAATCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAGCAA 189295 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||||||||| ||||| |||||||| | || || || || Sbjct 189294 CGTCTAATCTTTGCTGGTAAACAGCTCGAGGATGGTCGGACTCTTTCGGACTACAATATC 189235 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || ||||| || ||||| Sbjct 189234 CAGAAGGAGAGCACTCTCCATCTGGTCCTGAGA 189202 Score = 129 bits (142), Expect = 1e-24 Identities = 150/201 (75%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| ||||||||||| || || || |||||||| |||||||| || || ||||||| Sbjct 189863 TCGTCAAAACTCTCACCGGTAAGACCATCACCCTAGAGGTGGAGTCATCCGATACCATCG 189804 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || || || || || |||||||| || ||||| |||||||| || || | Sbjct 189803 ACAACGTTAAGTCGAAAATACAAGATAAAGAAGGCATTCCTCCAGACCAGCAGCGCCTAA 189744 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||||||||| || ||||| || || || | || ||| | ||||| || | || || | Sbjct 189743 TCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTTTCTGATTACAATATTCAGAAGG 189684 Query 178111 AATCAACACTGCATCTTGTTT 178131 | || || || || |||| || Sbjct 189683 AGTCCACTCTTCA-CTTGGTT 189664 Score = 104 bits (114), Expect = 6e-17 Identities = 136/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || || |||||||| || || || || ||||| | ||||| Sbjct 190157 ACCGGAAAGACTATAACCCTCGAAGTTGAGTCGGTTGATACAATCGATAGTGTCAAGTCC 190098 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||||||||| ||||| || ||||| ||||||||||| || || |||||||| || Sbjct 190097 AAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAGCAACGTCTGATTTTCGCCGGCAAG 190038 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | || || || | || ||| | ||||||||| | || || || ||||| || || Sbjct 190037 CAGTTGGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCAACTCTCCA- 189979 Query 178125 CTTGTTT 178131 |||| || Sbjct 189978 CTTGGTT 189972 >seq257 Length=236519 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| || | || |||||| Sbjct 59186 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATC 59127 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || || || |||||||| || || ||||| || || ||||| ||| | Sbjct 59126 GACAATGTAAAGTCGAAAATACAGGACAAGGAGGGTATCCCACCCGATCAGCAGCGATTG 59067 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| || || | || || |||||||| |||| || Sbjct 59066 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGAACGCTAAGTGATTATAATATCCAGAA 59008 >seq12 Length=85050 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || ||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct 76079 GACAAGGAGGGAATCCCTCCCGACCAGCAACGTCTGATCTTCGCCGGTAAACAGCTCGAG 76138 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | || || | || || ||| | || || || || || || || || || Sbjct 76139 GACGGTCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGT 76194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725169682854